Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5093 and Pf6N2E2_5094 are separated by 408 nucleotides Pf6N2E2_5094 and Pf6N2E2_5095 are separated by 132 nucleotides Pf6N2E2_5095 and Pf6N2E2_5096 are separated by 204 nucleotides Pf6N2E2_5096 and Pf6N2E2_5097 are separated by 134 nucleotides
Pf6N2E2_5093 - ATP-dependent protease La (EC 3.4.21.53) Type II, at 5,875,825 to 5,878,263
_5093
Pf6N2E2_5094 - FIG00956889: hypothetical protein, at 5,878,672 to 5,878,923
_5094
Pf6N2E2_5095 - Putative inner membrane protein (Fragment), at 5,879,056 to 5,879,544
_5095
Pf6N2E2_5096 - FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8), at 5,879,749 to 5,880,366
_5096
Pf6N2E2_5097 - FIG00953595: hypothetical protein, at 5,880,501 to 5,880,758
_5097
Position (kb)
5879
5880 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5878.379 kb on - strand at 5878.393 kb on + strand at 5878.492 kb on + strand at 5878.565 kb on + strand at 5878.566 kb on - strand at 5878.566 kb on - strand at 5878.566 kb on - strand at 5878.665 kb on + strand at 5878.666 kb on - strand at 5878.671 kb on + strand at 5878.776 kb on + strand, within Pf6N2E2_5094 at 5878.807 kb on + strand, within Pf6N2E2_5094 at 5878.832 kb on + strand, within Pf6N2E2_5094 at 5878.832 kb on + strand, within Pf6N2E2_5094 at 5878.832 kb on + strand, within Pf6N2E2_5094 at 5878.832 kb on + strand, within Pf6N2E2_5094 at 5878.832 kb on + strand, within Pf6N2E2_5094 at 5878.832 kb on + strand, within Pf6N2E2_5094 at 5878.833 kb on - strand, within Pf6N2E2_5094 at 5878.833 kb on - strand, within Pf6N2E2_5094 at 5878.833 kb on - strand, within Pf6N2E2_5094 at 5878.833 kb on - strand, within Pf6N2E2_5094 at 5878.833 kb on - strand, within Pf6N2E2_5094 at 5878.833 kb on - strand, within Pf6N2E2_5094 at 5878.951 kb on + strand at 5878.952 kb on - strand at 5879.017 kb on + strand at 5879.017 kb on + strand at 5879.017 kb on + strand at 5879.017 kb on + strand at 5879.018 kb on - strand at 5879.018 kb on - strand at 5879.018 kb on - strand at 5879.018 kb on - strand at 5879.019 kb on + strand at 5879.019 kb on + strand at 5879.019 kb on + strand at 5879.019 kb on + strand at 5879.019 kb on + strand at 5879.019 kb on + strand at 5879.020 kb on - strand at 5879.020 kb on - strand at 5879.020 kb on - strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.084 kb on - strand at 5879.084 kb on - strand at 5879.084 kb on - strand at 5879.084 kb on - strand at 5879.084 kb on - strand at 5879.084 kb on - strand at 5879.113 kb on + strand, within Pf6N2E2_5095 at 5879.470 kb on + strand, within Pf6N2E2_5095 at 5879.470 kb on + strand, within Pf6N2E2_5095 at 5879.470 kb on + strand, within Pf6N2E2_5095 at 5879.470 kb on + strand, within Pf6N2E2_5095 at 5879.471 kb on - strand, within Pf6N2E2_5095 at 5879.471 kb on - strand, within Pf6N2E2_5095 at 5879.471 kb on - strand, within Pf6N2E2_5095 at 5879.471 kb on - strand, within Pf6N2E2_5095 at 5879.579 kb on + strand at 5879.625 kb on + strand at 5879.626 kb on - strand at 5879.658 kb on + strand at 5879.658 kb on + strand at 5880.128 kb on - strand, within Pf6N2E2_5096 at 5880.169 kb on + strand, within Pf6N2E2_5096 at 5880.169 kb on + strand, within Pf6N2E2_5096 at 5880.169 kb on + strand, within Pf6N2E2_5096 at 5880.170 kb on - strand, within Pf6N2E2_5096 at 5880.170 kb on - strand, within Pf6N2E2_5096 at 5880.269 kb on - strand, within Pf6N2E2_5096 at 5880.269 kb on - strand, within Pf6N2E2_5096 at 5880.269 kb on - strand, within Pf6N2E2_5096 at 5880.290 kb on - strand, within Pf6N2E2_5096 at 5880.359 kb on + strand at 5880.359 kb on + strand at 5880.359 kb on + strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.364 kb on + strand at 5880.364 kb on + strand at 5880.365 kb on - strand at 5880.365 kb on - strand at 5880.365 kb on - strand at 5880.365 kb on - strand at 5880.382 kb on + strand at 5880.383 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 5,878,379 - -1.3 5,878,393 + +0.4 5,878,492 + +1.4 5,878,565 + -1.0 5,878,566 - +1.4 5,878,566 - +0.6 5,878,566 - +0.5 5,878,665 + -1.9 5,878,666 - +0.9 5,878,671 + +1.1 5,878,776 + Pf6N2E2_5094 0.41 +0.4 5,878,807 + Pf6N2E2_5094 0.54 -1.3 5,878,832 + Pf6N2E2_5094 0.63 -1.2 5,878,832 + Pf6N2E2_5094 0.63 -0.6 5,878,832 + Pf6N2E2_5094 0.63 +0.8 5,878,832 + Pf6N2E2_5094 0.63 -0.5 5,878,832 + Pf6N2E2_5094 0.63 -0.6 5,878,832 + Pf6N2E2_5094 0.63 -0.2 5,878,833 - Pf6N2E2_5094 0.64 -0.4 5,878,833 - Pf6N2E2_5094 0.64 -0.5 5,878,833 - Pf6N2E2_5094 0.64 +0.1 5,878,833 - Pf6N2E2_5094 0.64 -0.0 5,878,833 - Pf6N2E2_5094 0.64 +0.4 5,878,833 - Pf6N2E2_5094 0.64 -0.5 5,878,951 + -1.0 5,878,952 - -1.7 5,879,017 + +0.9 5,879,017 + -0.1 5,879,017 + +0.0 5,879,017 + -1.5 5,879,018 - -0.0 5,879,018 - -0.0 5,879,018 - +0.4 5,879,018 - +0.0 5,879,019 + -0.5 5,879,019 + -0.0 5,879,019 + -0.4 5,879,019 + -0.8 5,879,019 + +1.1 5,879,019 + -0.2 5,879,020 - +1.2 5,879,020 - -1.6 5,879,020 - +0.6 5,879,083 + -1.6 5,879,083 + -0.9 5,879,083 + -2.5 5,879,083 + -1.4 5,879,083 + -1.8 5,879,083 + +0.2 5,879,083 + +0.0 5,879,083 + +0.2 5,879,084 - -1.2 5,879,084 - -0.6 5,879,084 - -0.5 5,879,084 - +1.4 5,879,084 - -1.6 5,879,084 - -0.8 5,879,113 + Pf6N2E2_5095 0.12 +3.5 5,879,470 + Pf6N2E2_5095 0.85 -0.7 5,879,470 + Pf6N2E2_5095 0.85 -0.7 5,879,470 + Pf6N2E2_5095 0.85 -0.4 5,879,470 + Pf6N2E2_5095 0.85 -2.0 5,879,471 - Pf6N2E2_5095 0.85 +0.8 5,879,471 - Pf6N2E2_5095 0.85 -0.3 5,879,471 - Pf6N2E2_5095 0.85 +0.1 5,879,471 - Pf6N2E2_5095 0.85 +0.2 5,879,579 + +1.0 5,879,625 + +0.2 5,879,626 - +0.2 5,879,658 + +0.4 5,879,658 + +0.8 5,880,128 - Pf6N2E2_5096 0.61 -0.7 5,880,169 + Pf6N2E2_5096 0.68 +0.8 5,880,169 + Pf6N2E2_5096 0.68 -1.8 5,880,169 + Pf6N2E2_5096 0.68 -1.3 5,880,170 - Pf6N2E2_5096 0.68 -1.4 5,880,170 - Pf6N2E2_5096 0.68 -1.8 5,880,269 - Pf6N2E2_5096 0.84 -0.6 5,880,269 - Pf6N2E2_5096 0.84 -0.6 5,880,269 - Pf6N2E2_5096 0.84 +0.7 5,880,290 - Pf6N2E2_5096 0.88 +0.3 5,880,359 + +0.6 5,880,359 + -1.1 5,880,359 + +0.1 5,880,360 - -1.4 5,880,360 - -1.3 5,880,360 - -0.3 5,880,360 - +0.1 5,880,360 - -0.2 5,880,360 - +0.7 5,880,360 - +1.4 5,880,360 - +0.4 5,880,364 + +0.9 5,880,364 + -0.1 5,880,365 - -0.4 5,880,365 - -1.2 5,880,365 - +0.1 5,880,365 - +0.1 5,880,382 + +1.3 5,880,383 - -1.6
Or see this region's nucleotide sequence