Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4829

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4827 and Pf6N2E2_4828 overlap by 4 nucleotidesPf6N2E2_4828 and Pf6N2E2_4829 are separated by 238 nucleotidesPf6N2E2_4829 and Pf6N2E2_4830 are separated by 113 nucleotidesPf6N2E2_4830 and Pf6N2E2_4831 are separated by 75 nucleotides Pf6N2E2_4827 - Lipoate-protein ligase A, at 5,581,701 to 5,582,402 _4827 Pf6N2E2_4828 - Vfr transcriptional regulator / Cyclic AMP receptor protein, at 5,582,399 to 5,583,043 _4828 Pf6N2E2_4829 - OsmC/Ohr family protein, at 5,583,282 to 5,583,704 _4829 Pf6N2E2_4830 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 5,583,818 to 5,584,465 _4830 Pf6N2E2_4831 - Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17), at 5,584,541 to 5,584,894 _4831 Position (kb) 5583 5584Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5582.367 kb on + strandat 5582.650 kb on + strand, within Pf6N2E2_4828at 5582.650 kb on + strand, within Pf6N2E2_4828at 5582.651 kb on - strand, within Pf6N2E2_4828at 5582.651 kb on - strand, within Pf6N2E2_4828at 5582.651 kb on - strand, within Pf6N2E2_4828at 5582.685 kb on - strand, within Pf6N2E2_4828at 5582.685 kb on - strand, within Pf6N2E2_4828at 5582.685 kb on - strand, within Pf6N2E2_4828at 5582.685 kb on - strand, within Pf6N2E2_4828at 5582.688 kb on + strand, within Pf6N2E2_4828at 5582.688 kb on + strand, within Pf6N2E2_4828at 5582.689 kb on - strand, within Pf6N2E2_4828at 5582.689 kb on - strand, within Pf6N2E2_4828at 5582.733 kb on + strand, within Pf6N2E2_4828at 5582.813 kb on + strand, within Pf6N2E2_4828at 5582.850 kb on + strand, within Pf6N2E2_4828at 5582.850 kb on + strand, within Pf6N2E2_4828at 5582.851 kb on - strand, within Pf6N2E2_4828at 5582.851 kb on - strand, within Pf6N2E2_4828at 5582.851 kb on - strand, within Pf6N2E2_4828at 5582.885 kb on + strand, within Pf6N2E2_4828at 5582.885 kb on + strand, within Pf6N2E2_4828at 5582.885 kb on + strand, within Pf6N2E2_4828at 5582.885 kb on + strand, within Pf6N2E2_4828at 5582.885 kb on + strand, within Pf6N2E2_4828at 5582.885 kb on + strand, within Pf6N2E2_4828at 5582.885 kb on + strand, within Pf6N2E2_4828at 5582.885 kb on + strand, within Pf6N2E2_4828at 5582.886 kb on - strand, within Pf6N2E2_4828at 5582.886 kb on - strand, within Pf6N2E2_4828at 5582.886 kb on - strand, within Pf6N2E2_4828at 5582.893 kb on + strand, within Pf6N2E2_4828at 5583.031 kb on + strandat 5583.031 kb on + strandat 5583.049 kb on + strandat 5583.049 kb on + strandat 5583.049 kb on + strandat 5583.102 kb on + strandat 5583.139 kb on + strandat 5583.140 kb on - strandat 5583.150 kb on + strandat 5583.150 kb on + strandat 5583.166 kb on - strandat 5583.166 kb on - strandat 5583.182 kb on + strandat 5583.182 kb on + strandat 5583.183 kb on - strandat 5583.186 kb on + strandat 5583.186 kb on + strandat 5583.186 kb on + strandat 5583.186 kb on + strandat 5583.186 kb on + strandat 5583.186 kb on + strandat 5583.186 kb on + strandat 5583.187 kb on - strandat 5583.196 kb on + strandat 5583.196 kb on + strandat 5583.196 kb on + strandat 5583.197 kb on - strandat 5583.210 kb on + strandat 5583.211 kb on - strandat 5583.211 kb on - strandat 5583.244 kb on + strandat 5583.244 kb on + strandat 5583.244 kb on + strandat 5583.244 kb on + strandat 5583.244 kb on + strandat 5583.244 kb on + strandat 5583.263 kb on + strandat 5583.263 kb on + strandat 5583.437 kb on + strand, within Pf6N2E2_4829at 5583.539 kb on + strand, within Pf6N2E2_4829at 5583.539 kb on + strand, within Pf6N2E2_4829at 5583.627 kb on + strand, within Pf6N2E2_4829at 5583.627 kb on + strand, within Pf6N2E2_4829at 5583.627 kb on + strand, within Pf6N2E2_4829at 5583.627 kb on + strand, within Pf6N2E2_4829at 5583.627 kb on + strand, within Pf6N2E2_4829at 5583.627 kb on + strand, within Pf6N2E2_4829at 5583.627 kb on + strand, within Pf6N2E2_4829at 5583.628 kb on - strand, within Pf6N2E2_4829at 5583.628 kb on - strand, within Pf6N2E2_4829at 5583.628 kb on - strand, within Pf6N2E2_4829at 5583.682 kb on - strandat 5583.682 kb on - strandat 5583.778 kb on + strandat 5583.779 kb on - strandat 5583.812 kb on + strandat 5584.470 kb on - strandat 5584.470 kb on - strandat 5584.540 kb on - strandat 5584.540 kb on - strandat 5584.540 kb on - strandat 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.585 kb on + strand, within Pf6N2E2_4831at 5584.586 kb on - strand, within Pf6N2E2_4831at 5584.586 kb on - strand, within Pf6N2E2_4831at 5584.586 kb on - strand, within Pf6N2E2_4831at 5584.586 kb on - strand, within Pf6N2E2_4831at 5584.586 kb on - strand, within Pf6N2E2_4831at 5584.586 kb on - strand, within Pf6N2E2_4831at 5584.586 kb on - strand, within Pf6N2E2_4831at 5584.586 kb on - strand, within Pf6N2E2_4831at 5584.586 kb on - strand, within Pf6N2E2_4831at 5584.586 kb on - strand, within Pf6N2E2_4831at 5584.586 kb on - strand, within Pf6N2E2_4831at 5584.586 kb on - strand, within Pf6N2E2_4831at 5584.596 kb on + strand, within Pf6N2E2_4831at 5584.596 kb on + strand, within Pf6N2E2_4831at 5584.596 kb on + strand, within Pf6N2E2_4831at 5584.596 kb on + strand, within Pf6N2E2_4831

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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5,582,367 + -0.5
5,582,650 + Pf6N2E2_4828 0.39 -0.8
5,582,650 + Pf6N2E2_4828 0.39 -0.7
5,582,651 - Pf6N2E2_4828 0.39 +0.5
5,582,651 - Pf6N2E2_4828 0.39 -0.0
5,582,651 - Pf6N2E2_4828 0.39 -0.6
5,582,685 - Pf6N2E2_4828 0.44 +0.2
5,582,685 - Pf6N2E2_4828 0.44 +0.1
5,582,685 - Pf6N2E2_4828 0.44 -0.9
5,582,685 - Pf6N2E2_4828 0.44 -0.2
5,582,688 + Pf6N2E2_4828 0.45 +1.5
5,582,688 + Pf6N2E2_4828 0.45 -1.1
5,582,689 - Pf6N2E2_4828 0.45 -1.2
5,582,689 - Pf6N2E2_4828 0.45 -0.6
5,582,733 + Pf6N2E2_4828 0.52 -1.5
5,582,813 + Pf6N2E2_4828 0.64 +0.5
5,582,850 + Pf6N2E2_4828 0.70 +0.1
5,582,850 + Pf6N2E2_4828 0.70 -0.3
5,582,851 - Pf6N2E2_4828 0.70 -0.2
5,582,851 - Pf6N2E2_4828 0.70 -0.1
5,582,851 - Pf6N2E2_4828 0.70 -1.2
5,582,885 + Pf6N2E2_4828 0.75 -0.7
5,582,885 + Pf6N2E2_4828 0.75 -0.8
5,582,885 + Pf6N2E2_4828 0.75 +0.5
5,582,885 + Pf6N2E2_4828 0.75 -0.7
5,582,885 + Pf6N2E2_4828 0.75 -0.4
5,582,885 + Pf6N2E2_4828 0.75 -1.8
5,582,885 + Pf6N2E2_4828 0.75 +0.5
5,582,885 + Pf6N2E2_4828 0.75 -0.9
5,582,886 - Pf6N2E2_4828 0.76 -0.6
5,582,886 - Pf6N2E2_4828 0.76 -0.6
5,582,886 - Pf6N2E2_4828 0.76 -0.3
5,582,893 + Pf6N2E2_4828 0.77 -0.7
5,583,031 + +0.5
5,583,031 + -0.1
5,583,049 + +0.2
5,583,049 + -0.5
5,583,049 + +0.4
5,583,102 + -0.2
5,583,139 + -0.5
5,583,140 - +3.5
5,583,150 + -0.4
5,583,150 + -1.5
5,583,166 - +1.9
5,583,166 - +1.5
5,583,182 + -0.2
5,583,182 + -0.2
5,583,183 - +1.5
5,583,186 + -0.9
5,583,186 + -2.1
5,583,186 + -0.5
5,583,186 + -0.1
5,583,186 + -0.6
5,583,186 + -0.6
5,583,186 + +0.0
5,583,187 - +2.3
5,583,196 + -0.1
5,583,196 + -0.7
5,583,196 + +0.1
5,583,197 - +2.0
5,583,210 + -0.2
5,583,211 - +3.1
5,583,211 - +1.3
5,583,244 + -0.8
5,583,244 + -0.8
5,583,244 + -2.1
5,583,244 + -2.0
5,583,244 + +0.7
5,583,244 + -1.2
5,583,263 + -1.8
5,583,263 + -1.2
5,583,437 + Pf6N2E2_4829 0.37 -1.3
5,583,539 + Pf6N2E2_4829 0.61 -2.0
5,583,539 + Pf6N2E2_4829 0.61 -2.5
5,583,627 + Pf6N2E2_4829 0.82 -2.1
5,583,627 + Pf6N2E2_4829 0.82 -3.1
5,583,627 + Pf6N2E2_4829 0.82 -2.3
5,583,627 + Pf6N2E2_4829 0.82 -0.7
5,583,627 + Pf6N2E2_4829 0.82 -2.0
5,583,627 + Pf6N2E2_4829 0.82 -0.5
5,583,627 + Pf6N2E2_4829 0.82 -2.5
5,583,628 - Pf6N2E2_4829 0.82 -0.4
5,583,628 - Pf6N2E2_4829 0.82 +1.5
5,583,628 - Pf6N2E2_4829 0.82 -1.6
5,583,682 - -0.1
5,583,682 - +0.2
5,583,778 + +0.5
5,583,779 - -0.5
5,583,812 + -0.5
5,584,470 - -0.8
5,584,470 - -1.2
5,584,540 - -1.1
5,584,540 - -2.2
5,584,540 - -0.6
5,584,585 + Pf6N2E2_4831 0.12 -0.2
5,584,585 + Pf6N2E2_4831 0.12 -1.3
5,584,585 + Pf6N2E2_4831 0.12 +0.2
5,584,585 + Pf6N2E2_4831 0.12 +2.5
5,584,585 + Pf6N2E2_4831 0.12 -2.7
5,584,585 + Pf6N2E2_4831 0.12 -1.2
5,584,585 + Pf6N2E2_4831 0.12 +0.9
5,584,585 + Pf6N2E2_4831 0.12 +0.7
5,584,585 + Pf6N2E2_4831 0.12 -1.1
5,584,585 + Pf6N2E2_4831 0.12 -2.1
5,584,585 + Pf6N2E2_4831 0.12 +0.5
5,584,585 + Pf6N2E2_4831 0.12 +1.5
5,584,585 + Pf6N2E2_4831 0.12 -0.9
5,584,585 + Pf6N2E2_4831 0.12 -1.3
5,584,586 - Pf6N2E2_4831 0.13 +0.2
5,584,586 - Pf6N2E2_4831 0.13 -1.5
5,584,586 - Pf6N2E2_4831 0.13 -0.3
5,584,586 - Pf6N2E2_4831 0.13 +0.1
5,584,586 - Pf6N2E2_4831 0.13 +1.5
5,584,586 - Pf6N2E2_4831 0.13 +1.5
5,584,586 - Pf6N2E2_4831 0.13 -0.3
5,584,586 - Pf6N2E2_4831 0.13 -0.7
5,584,586 - Pf6N2E2_4831 0.13 +0.1
5,584,586 - Pf6N2E2_4831 0.13 -1.0
5,584,586 - Pf6N2E2_4831 0.13 +0.2
5,584,586 - Pf6N2E2_4831 0.13 -0.1
5,584,596 + Pf6N2E2_4831 0.16 -0.3
5,584,596 + Pf6N2E2_4831 0.16 -0.4
5,584,596 + Pf6N2E2_4831 0.16 +0.8
5,584,596 + Pf6N2E2_4831 0.16 -0.1

Or see this region's nucleotide sequence