Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4752 and Pf6N2E2_4753 are separated by 512 nucleotides Pf6N2E2_4753 and Pf6N2E2_4754 are separated by 217 nucleotides
Pf6N2E2_4752 - Malate synthase G (EC 2.3.3.9), at 5,488,836 to 5,491,013
_4752
Pf6N2E2_4753 - Glycine cleavage system transcriptional antiactivator GcvR, at 5,491,526 to 5,492,044
_4753
Pf6N2E2_4754 - Protein rarD, at 5,492,262 to 5,493,149
_4754
Position (kb) 5491
5492
5493 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 5490.586 kb on + strand, within Pf6N2E2_4752 at 5490.587 kb on - strand, within Pf6N2E2_4752 at 5490.587 kb on - strand, within Pf6N2E2_4752 at 5490.587 kb on - strand, within Pf6N2E2_4752 at 5490.598 kb on + strand, within Pf6N2E2_4752 at 5490.599 kb on - strand, within Pf6N2E2_4752 at 5490.599 kb on - strand, within Pf6N2E2_4752 at 5490.713 kb on + strand, within Pf6N2E2_4752 at 5490.714 kb on - strand, within Pf6N2E2_4752 at 5490.745 kb on + strand, within Pf6N2E2_4752 at 5490.746 kb on - strand, within Pf6N2E2_4752 at 5490.746 kb on - strand, within Pf6N2E2_4752 at 5490.772 kb on + strand, within Pf6N2E2_4752 at 5490.772 kb on + strand, within Pf6N2E2_4752 at 5490.772 kb on + strand, within Pf6N2E2_4752 at 5490.773 kb on - strand, within Pf6N2E2_4752 at 5490.856 kb on - strand at 5491.036 kb on + strand at 5491.036 kb on + strand at 5491.036 kb on + strand at 5491.037 kb on - strand at 5491.085 kb on + strand at 5491.085 kb on + strand at 5491.085 kb on + strand at 5491.086 kb on - strand at 5491.086 kb on - strand at 5491.086 kb on - strand at 5491.086 kb on - strand at 5491.086 kb on - strand at 5491.086 kb on - strand at 5491.109 kb on - strand at 5491.109 kb on - strand at 5491.109 kb on - strand at 5491.109 kb on - strand at 5491.135 kb on + strand at 5491.135 kb on + strand at 5491.135 kb on + strand at 5491.136 kb on - strand at 5491.178 kb on - strand at 5491.191 kb on + strand at 5491.191 kb on + strand at 5491.191 kb on + strand at 5491.191 kb on + strand at 5491.192 kb on - strand at 5491.192 kb on - strand at 5491.192 kb on - strand at 5491.192 kb on - strand at 5491.199 kb on + strand at 5491.199 kb on + strand at 5491.199 kb on + strand at 5491.199 kb on + strand at 5491.199 kb on + strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.200 kb on - strand at 5491.203 kb on + strand at 5491.203 kb on + strand at 5491.203 kb on + strand at 5491.204 kb on - strand at 5491.204 kb on - strand at 5491.220 kb on + strand at 5491.221 kb on - strand at 5491.221 kb on - strand at 5491.221 kb on - strand at 5491.221 kb on - strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.223 kb on + strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.224 kb on - strand at 5491.255 kb on + strand at 5491.255 kb on + strand at 5491.255 kb on + strand at 5491.255 kb on + strand at 5491.255 kb on + strand at 5491.255 kb on + strand at 5491.256 kb on - strand at 5491.256 kb on - strand at 5491.280 kb on - strand at 5491.287 kb on + strand at 5491.288 kb on - strand at 5491.423 kb on + strand at 5491.492 kb on + strand at 5491.492 kb on + strand at 5491.492 kb on + strand at 5491.492 kb on + strand at 5491.492 kb on + strand at 5491.492 kb on + strand at 5491.492 kb on + strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.493 kb on - strand at 5491.494 kb on + strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.495 kb on - strand at 5491.730 kb on + strand, within Pf6N2E2_4753 at 5491.730 kb on + strand, within Pf6N2E2_4753 at 5491.731 kb on - strand, within Pf6N2E2_4753 at 5491.731 kb on - strand, within Pf6N2E2_4753 at 5491.731 kb on - strand, within Pf6N2E2_4753 at 5491.731 kb on - strand, within Pf6N2E2_4753 at 5491.827 kb on + strand, within Pf6N2E2_4753 at 5491.828 kb on - strand, within Pf6N2E2_4753 at 5491.889 kb on + strand, within Pf6N2E2_4753 at 5491.889 kb on + strand, within Pf6N2E2_4753 at 5491.889 kb on + strand, within Pf6N2E2_4753 at 5491.889 kb on + strand, within Pf6N2E2_4753 at 5491.889 kb on + strand, within Pf6N2E2_4753 at 5491.889 kb on + strand, within Pf6N2E2_4753 at 5491.890 kb on - strand, within Pf6N2E2_4753 at 5491.890 kb on - strand, within Pf6N2E2_4753 at 5491.890 kb on - strand, within Pf6N2E2_4753 at 5491.890 kb on - strand, within Pf6N2E2_4753 at 5491.890 kb on - strand, within Pf6N2E2_4753 at 5492.241 kb on - strand at 5492.302 kb on + strand at 5492.302 kb on + strand at 5492.303 kb on - strand at 5492.303 kb on - strand at 5492.324 kb on + strand at 5492.410 kb on + strand, within Pf6N2E2_4754 at 5492.411 kb on - strand, within Pf6N2E2_4754 at 5492.411 kb on - strand, within Pf6N2E2_4754 at 5492.411 kb on - strand, within Pf6N2E2_4754 at 5492.429 kb on + strand, within Pf6N2E2_4754 at 5492.429 kb on + strand, within Pf6N2E2_4754 at 5492.429 kb on + strand, within Pf6N2E2_4754 at 5492.429 kb on + strand, within Pf6N2E2_4754 at 5492.429 kb on + strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.430 kb on - strand, within Pf6N2E2_4754 at 5492.434 kb on + strand, within Pf6N2E2_4754 at 5492.434 kb on + strand, within Pf6N2E2_4754 at 5492.435 kb on - strand, within Pf6N2E2_4754 at 5492.435 kb on - strand, within Pf6N2E2_4754 at 5492.435 kb on - strand, within Pf6N2E2_4754 at 5492.607 kb on + strand, within Pf6N2E2_4754 at 5492.608 kb on - strand, within Pf6N2E2_4754 at 5492.608 kb on - strand, within Pf6N2E2_4754 at 5492.608 kb on - strand, within Pf6N2E2_4754 at 5492.659 kb on + strand, within Pf6N2E2_4754 at 5492.660 kb on - strand, within Pf6N2E2_4754 at 5492.808 kb on + strand, within Pf6N2E2_4754 at 5492.808 kb on + strand, within Pf6N2E2_4754 at 5492.808 kb on + strand, within Pf6N2E2_4754 at 5492.808 kb on + strand, within Pf6N2E2_4754 at 5492.808 kb on + strand, within Pf6N2E2_4754 at 5492.808 kb on + strand, within Pf6N2E2_4754 at 5492.809 kb on - strand at 5492.809 kb on - strand, within Pf6N2E2_4754 at 5492.809 kb on - strand, within Pf6N2E2_4754 at 5492.809 kb on - strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.830 kb on + strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.831 kb on - strand, within Pf6N2E2_4754 at 5492.833 kb on + strand, within Pf6N2E2_4754 at 5492.834 kb on - strand, within Pf6N2E2_4754 at 5492.834 kb on - strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.881 kb on + strand, within Pf6N2E2_4754 at 5492.882 kb on - strand, within Pf6N2E2_4754 at 5492.882 kb on - strand, within Pf6N2E2_4754 at 5492.882 kb on - strand, within Pf6N2E2_4754
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 5,490,586 + Pf6N2E2_4752 0.80 -0.4 5,490,587 - Pf6N2E2_4752 0.80 -0.5 5,490,587 - Pf6N2E2_4752 0.80 +0.4 5,490,587 - Pf6N2E2_4752 0.80 -0.5 5,490,598 + Pf6N2E2_4752 0.81 +0.3 5,490,599 - Pf6N2E2_4752 0.81 -0.3 5,490,599 - Pf6N2E2_4752 0.81 +0.3 5,490,713 + Pf6N2E2_4752 0.86 -0.7 5,490,714 - Pf6N2E2_4752 0.86 +1.1 5,490,745 + Pf6N2E2_4752 0.88 +1.1 5,490,746 - Pf6N2E2_4752 0.88 +0.3 5,490,746 - Pf6N2E2_4752 0.88 -0.9 5,490,772 + Pf6N2E2_4752 0.89 -0.7 5,490,772 + Pf6N2E2_4752 0.89 +0.7 5,490,772 + Pf6N2E2_4752 0.89 -0.3 5,490,773 - Pf6N2E2_4752 0.89 +0.0 5,490,856 - -1.0 5,491,036 + -0.3 5,491,036 + -0.8 5,491,036 + +0.9 5,491,037 - +1.2 5,491,085 + -0.0 5,491,085 + +1.2 5,491,085 + -0.1 5,491,086 - -0.9 5,491,086 - -0.5 5,491,086 - +0.5 5,491,086 - +1.5 5,491,086 - +1.5 5,491,086 - +2.1 5,491,109 - +2.5 5,491,109 - +1.3 5,491,109 - -1.6 5,491,109 - -0.2 5,491,135 + -1.0 5,491,135 + +1.0 5,491,135 + +2.9 5,491,136 - -0.0 5,491,178 - -0.5 5,491,191 + +1.2 5,491,191 + +0.9 5,491,191 + +0.5 5,491,191 + +1.4 5,491,192 - +0.0 5,491,192 - -1.5 5,491,192 - -0.6 5,491,192 - -0.1 5,491,199 + +1.5 5,491,199 + +0.8 5,491,199 + -0.5 5,491,199 + +0.5 5,491,199 + -0.2 5,491,200 - +0.1 5,491,200 - -0.5 5,491,200 - +0.5 5,491,200 - +1.5 5,491,200 - -0.2 5,491,200 - +0.8 5,491,200 - +0.5 5,491,200 - +0.8 5,491,200 - +0.1 5,491,200 - -0.3 5,491,200 - +1.5 5,491,203 + +1.1 5,491,203 + -0.3 5,491,203 + -1.3 5,491,204 - +0.4 5,491,204 - +2.4 5,491,220 + +0.4 5,491,221 - -0.0 5,491,221 - -0.0 5,491,221 - -0.5 5,491,221 - -0.9 5,491,223 + -0.2 5,491,223 + -0.2 5,491,223 + -0.6 5,491,223 + -0.6 5,491,223 + -0.6 5,491,223 + -1.2 5,491,223 + +0.2 5,491,223 + -0.7 5,491,223 + -1.7 5,491,223 + +1.1 5,491,224 - -0.8 5,491,224 - +0.4 5,491,224 - +1.1 5,491,224 - -0.5 5,491,224 - -0.8 5,491,224 - +1.3 5,491,224 - -0.1 5,491,224 - -0.3 5,491,224 - -1.3 5,491,224 - +0.8 5,491,224 - +0.3 5,491,255 + -1.6 5,491,255 + -0.3 5,491,255 + -0.8 5,491,255 + -0.0 5,491,255 + -0.2 5,491,255 + +0.3 5,491,256 - +2.5 5,491,256 - -0.5 5,491,280 - -0.4 5,491,287 + +1.5 5,491,288 - +0.5 5,491,423 + -1.0 5,491,492 + +0.9 5,491,492 + +1.0 5,491,492 + -0.1 5,491,492 + +0.6 5,491,492 + +0.6 5,491,492 + +0.2 5,491,492 + +0.6 5,491,493 - +1.2 5,491,493 - -0.5 5,491,493 - -0.8 5,491,493 - +1.4 5,491,493 - +0.5 5,491,493 - -2.6 5,491,493 - -0.7 5,491,493 - +0.4 5,491,494 + +0.6 5,491,495 - +0.5 5,491,495 - -0.9 5,491,495 - +0.4 5,491,495 - +0.5 5,491,495 - -2.4 5,491,495 - +0.1 5,491,495 - +0.1 5,491,495 - -0.0 5,491,730 + Pf6N2E2_4753 0.39 +1.5 5,491,730 + Pf6N2E2_4753 0.39 +1.8 5,491,731 - Pf6N2E2_4753 0.39 +1.4 5,491,731 - Pf6N2E2_4753 0.39 +1.9 5,491,731 - Pf6N2E2_4753 0.39 -0.0 5,491,731 - Pf6N2E2_4753 0.39 -0.2 5,491,827 + Pf6N2E2_4753 0.58 +2.2 5,491,828 - Pf6N2E2_4753 0.58 +0.5 5,491,889 + Pf6N2E2_4753 0.70 +1.2 5,491,889 + Pf6N2E2_4753 0.70 +1.2 5,491,889 + Pf6N2E2_4753 0.70 +1.3 5,491,889 + Pf6N2E2_4753 0.70 +0.4 5,491,889 + Pf6N2E2_4753 0.70 -0.8 5,491,889 + Pf6N2E2_4753 0.70 +1.0 5,491,890 - Pf6N2E2_4753 0.70 -0.2 5,491,890 - Pf6N2E2_4753 0.70 +0.9 5,491,890 - Pf6N2E2_4753 0.70 -0.2 5,491,890 - Pf6N2E2_4753 0.70 +1.4 5,491,890 - Pf6N2E2_4753 0.70 +1.5 5,492,241 - +2.0 5,492,302 + +3.1 5,492,302 + +4.0 5,492,303 - +3.9 5,492,303 - +2.2 5,492,324 + +3.3 5,492,410 + Pf6N2E2_4754 0.17 +3.8 5,492,411 - Pf6N2E2_4754 0.17 +3.9 5,492,411 - Pf6N2E2_4754 0.17 +4.4 5,492,411 - Pf6N2E2_4754 0.17 +3.4 5,492,429 + Pf6N2E2_4754 0.19 +3.2 5,492,429 + Pf6N2E2_4754 0.19 +5.0 5,492,429 + Pf6N2E2_4754 0.19 +3.7 5,492,429 + Pf6N2E2_4754 0.19 +2.5 5,492,429 + Pf6N2E2_4754 0.19 +2.2 5,492,430 - Pf6N2E2_4754 0.19 +4.3 5,492,430 - Pf6N2E2_4754 0.19 +3.4 5,492,430 - Pf6N2E2_4754 0.19 +3.4 5,492,430 - Pf6N2E2_4754 0.19 +3.4 5,492,430 - Pf6N2E2_4754 0.19 +3.3 5,492,430 - Pf6N2E2_4754 0.19 +3.0 5,492,430 - Pf6N2E2_4754 0.19 +3.3 5,492,430 - Pf6N2E2_4754 0.19 +3.5 5,492,430 - Pf6N2E2_4754 0.19 +3.3 5,492,434 + Pf6N2E2_4754 0.19 +4.7 5,492,434 + Pf6N2E2_4754 0.19 +3.1 5,492,435 - Pf6N2E2_4754 0.19 +3.2 5,492,435 - Pf6N2E2_4754 0.19 +3.9 5,492,435 - Pf6N2E2_4754 0.19 +3.5 5,492,607 + Pf6N2E2_4754 0.39 +5.0 5,492,608 - Pf6N2E2_4754 0.39 +3.6 5,492,608 - Pf6N2E2_4754 0.39 +5.1 5,492,608 - Pf6N2E2_4754 0.39 +4.2 5,492,659 + Pf6N2E2_4754 0.45 +3.8 5,492,660 - Pf6N2E2_4754 0.45 +4.0 5,492,808 + Pf6N2E2_4754 0.61 +2.3 5,492,808 + Pf6N2E2_4754 0.61 +3.9 5,492,808 + Pf6N2E2_4754 0.61 +3.2 5,492,808 + Pf6N2E2_4754 0.61 +1.8 5,492,808 + Pf6N2E2_4754 0.61 +3.6 5,492,808 + Pf6N2E2_4754 0.61 +5.2 5,492,809 - +4.3 5,492,809 - Pf6N2E2_4754 0.62 +4.3 5,492,809 - Pf6N2E2_4754 0.62 +2.1 5,492,809 - Pf6N2E2_4754 0.62 +2.5 5,492,830 + Pf6N2E2_4754 0.64 +3.4 5,492,830 + Pf6N2E2_4754 0.64 +4.3 5,492,830 + Pf6N2E2_4754 0.64 +3.6 5,492,830 + Pf6N2E2_4754 0.64 +3.7 5,492,830 + Pf6N2E2_4754 0.64 +3.2 5,492,830 + Pf6N2E2_4754 0.64 +3.1 5,492,830 + Pf6N2E2_4754 0.64 +3.1 5,492,830 + Pf6N2E2_4754 0.64 +1.6 5,492,830 + Pf6N2E2_4754 0.64 +3.5 5,492,831 - Pf6N2E2_4754 0.64 +3.3 5,492,831 - Pf6N2E2_4754 0.64 +4.2 5,492,831 - Pf6N2E2_4754 0.64 +3.1 5,492,831 - Pf6N2E2_4754 0.64 +3.3 5,492,831 - Pf6N2E2_4754 0.64 +4.5 5,492,831 - Pf6N2E2_4754 0.64 +2.5 5,492,831 - Pf6N2E2_4754 0.64 +3.4 5,492,831 - Pf6N2E2_4754 0.64 +3.1 5,492,833 + Pf6N2E2_4754 0.64 +3.6 5,492,834 - Pf6N2E2_4754 0.64 +2.8 5,492,834 - Pf6N2E2_4754 0.64 +3.3 5,492,881 + Pf6N2E2_4754 0.70 +2.9 5,492,881 + Pf6N2E2_4754 0.70 +4.1 5,492,881 + Pf6N2E2_4754 0.70 +3.4 5,492,881 + Pf6N2E2_4754 0.70 +3.1 5,492,881 + Pf6N2E2_4754 0.70 +3.3 5,492,881 + Pf6N2E2_4754 0.70 +3.6 5,492,881 + Pf6N2E2_4754 0.70 +3.4 5,492,881 + Pf6N2E2_4754 0.70 +3.1 5,492,882 - Pf6N2E2_4754 0.70 +4.5 5,492,882 - Pf6N2E2_4754 0.70 +3.1 5,492,882 - Pf6N2E2_4754 0.70 +2.5
Or see this region's nucleotide sequence