Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2841

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2840 and Pf6N2E2_2841 are separated by 404 nucleotidesPf6N2E2_2841 and Pf6N2E2_2842 are separated by 169 nucleotidesPf6N2E2_2842 and Pf6N2E2_2843 are separated by 144 nucleotidesPf6N2E2_2843 and Pf6N2E2_2844 are separated by 94 nucleotides Pf6N2E2_2840 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 3,330,289 to 3,330,489 _2840 Pf6N2E2_2841 - Low-affinity inorganic phosphate transporter, at 3,330,894 to 3,332,330 _2841 Pf6N2E2_2842 - hypothetical protein, at 3,332,500 to 3,332,616 _2842 Pf6N2E2_2843 - FIG00959308: hypothetical protein, at 3,332,761 to 3,332,922 _2843 Pf6N2E2_2844 - Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11), at 3,333,017 to 3,333,358 _2844 Position (kb) 3330 3331 3332 3333Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3329.957 kb on - strandat 3329.998 kb on + strandat 3329.998 kb on + strandat 3329.998 kb on + strandat 3329.998 kb on + strandat 3329.999 kb on - strandat 3329.999 kb on - strandat 3329.999 kb on - strandat 3330.032 kb on + strandat 3330.052 kb on + strandat 3330.053 kb on - strandat 3330.068 kb on + strandat 3330.069 kb on - strandat 3330.069 kb on - strandat 3330.070 kb on + strandat 3330.070 kb on + strandat 3330.071 kb on - strandat 3330.127 kb on + strandat 3330.127 kb on + strandat 3330.127 kb on + strandat 3330.127 kb on + strandat 3330.131 kb on - strandat 3330.153 kb on + strandat 3330.154 kb on - strandat 3330.170 kb on - strandat 3330.198 kb on - strandat 3330.198 kb on - strandat 3330.198 kb on - strandat 3330.239 kb on + strandat 3330.239 kb on + strandat 3330.240 kb on - strandat 3330.240 kb on - strandat 3330.274 kb on + strandat 3330.274 kb on + strandat 3330.274 kb on + strandat 3330.275 kb on - strandat 3330.275 kb on - strandat 3330.278 kb on + strandat 3330.279 kb on - strandat 3330.279 kb on - strandat 3330.282 kb on + strandat 3330.282 kb on + strandat 3330.282 kb on + strandat 3330.282 kb on + strandat 3330.338 kb on - strand, within Pf6N2E2_2840at 3330.338 kb on - strand, within Pf6N2E2_2840at 3330.338 kb on - strand, within Pf6N2E2_2840at 3330.370 kb on + strand, within Pf6N2E2_2840at 3330.370 kb on + strand, within Pf6N2E2_2840at 3330.370 kb on + strand, within Pf6N2E2_2840at 3330.370 kb on + strand, within Pf6N2E2_2840at 3330.371 kb on - strand, within Pf6N2E2_2840at 3330.371 kb on - strand, within Pf6N2E2_2840at 3330.371 kb on - strand, within Pf6N2E2_2840at 3330.371 kb on - strand, within Pf6N2E2_2840at 3330.396 kb on + strand, within Pf6N2E2_2840at 3330.396 kb on + strand, within Pf6N2E2_2840at 3330.396 kb on + strand, within Pf6N2E2_2840at 3330.396 kb on + strand, within Pf6N2E2_2840at 3330.396 kb on + strand, within Pf6N2E2_2840at 3330.396 kb on + strand, within Pf6N2E2_2840at 3330.397 kb on - strand, within Pf6N2E2_2840at 3330.409 kb on - strand, within Pf6N2E2_2840at 3330.631 kb on - strandat 3330.657 kb on + strandat 3330.657 kb on + strandat 3330.749 kb on + strandat 3332.380 kb on + strandat 3332.386 kb on + strandat 3332.387 kb on - strandat 3332.501 kb on + strandat 3332.540 kb on - strand, within Pf6N2E2_2842at 3332.560 kb on + strand, within Pf6N2E2_2842at 3332.731 kb on - strandat 3332.907 kb on + strandat 3332.997 kb on + strandat 3332.998 kb on - strandat 3333.282 kb on - strand, within Pf6N2E2_2844at 3333.282 kb on - strand, within Pf6N2E2_2844at 3333.322 kb on + strand, within Pf6N2E2_2844at 3333.322 kb on + strand, within Pf6N2E2_2844at 3333.322 kb on + strand, within Pf6N2E2_2844at 3333.322 kb on + strand, within Pf6N2E2_2844at 3333.322 kb on + strand, within Pf6N2E2_2844at 3333.322 kb on + strand, within Pf6N2E2_2844at 3333.322 kb on + strand, within Pf6N2E2_2844at 3333.322 kb on + strand, within Pf6N2E2_2844at 3333.323 kb on - strand, within Pf6N2E2_2844at 3333.326 kb on + strandat 3333.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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3,329,957 - -0.0
3,329,998 + +0.8
3,329,998 + +1.5
3,329,998 + +1.0
3,329,998 + +1.3
3,329,999 - -1.0
3,329,999 - -1.7
3,329,999 - +0.8
3,330,032 + +1.6
3,330,052 + -0.3
3,330,053 - -1.3
3,330,068 + +0.7
3,330,069 - +1.3
3,330,069 - -2.5
3,330,070 + +0.3
3,330,070 + +0.3
3,330,071 - +0.6
3,330,127 + +0.3
3,330,127 + +0.7
3,330,127 + +3.0
3,330,127 + +2.3
3,330,131 - -2.4
3,330,153 + +0.7
3,330,154 - -1.0
3,330,170 - -2.2
3,330,198 - -0.2
3,330,198 - -0.7
3,330,198 - +0.8
3,330,239 + -0.1
3,330,239 + +1.3
3,330,240 - +0.7
3,330,240 - +0.3
3,330,274 + -2.0
3,330,274 + +1.5
3,330,274 + -1.3
3,330,275 - -1.3
3,330,275 - +0.4
3,330,278 + +1.8
3,330,279 - -0.6
3,330,279 - -1.7
3,330,282 + +0.6
3,330,282 + +1.9
3,330,282 + +0.3
3,330,282 + -0.7
3,330,338 - Pf6N2E2_2840 0.24 +2.6
3,330,338 - Pf6N2E2_2840 0.24 +0.4
3,330,338 - Pf6N2E2_2840 0.24 +1.3
3,330,370 + Pf6N2E2_2840 0.40 -2.2
3,330,370 + Pf6N2E2_2840 0.40 -0.8
3,330,370 + Pf6N2E2_2840 0.40 -0.7
3,330,370 + Pf6N2E2_2840 0.40 +1.0
3,330,371 - Pf6N2E2_2840 0.41 -1.0
3,330,371 - Pf6N2E2_2840 0.41 -1.0
3,330,371 - Pf6N2E2_2840 0.41 +2.3
3,330,371 - Pf6N2E2_2840 0.41 +0.3
3,330,396 + Pf6N2E2_2840 0.53 +2.3
3,330,396 + Pf6N2E2_2840 0.53 -1.7
3,330,396 + Pf6N2E2_2840 0.53 -0.8
3,330,396 + Pf6N2E2_2840 0.53 -0.5
3,330,396 + Pf6N2E2_2840 0.53 -2.0
3,330,396 + Pf6N2E2_2840 0.53 +0.3
3,330,397 - Pf6N2E2_2840 0.54 -0.9
3,330,409 - Pf6N2E2_2840 0.60 +0.5
3,330,631 - +0.3
3,330,657 + -0.7
3,330,657 + +0.3
3,330,749 + -0.0
3,332,380 + +0.8
3,332,386 + -2.5
3,332,387 - -0.8
3,332,501 + -1.9
3,332,540 - Pf6N2E2_2842 0.34 -0.8
3,332,560 + Pf6N2E2_2842 0.51 +0.5
3,332,731 - +0.1
3,332,907 + -0.4
3,332,997 + +1.0
3,332,998 - -0.3
3,333,282 - Pf6N2E2_2844 0.77 +0.3
3,333,282 - Pf6N2E2_2844 0.77 -0.0
3,333,322 + Pf6N2E2_2844 0.89 -0.7
3,333,322 + Pf6N2E2_2844 0.89 +0.3
3,333,322 + Pf6N2E2_2844 0.89 -0.6
3,333,322 + Pf6N2E2_2844 0.89 +1.0
3,333,322 + Pf6N2E2_2844 0.89 -1.0
3,333,322 + Pf6N2E2_2844 0.89 +0.7
3,333,322 + Pf6N2E2_2844 0.89 -0.0
3,333,322 + Pf6N2E2_2844 0.89 -0.8
3,333,323 - Pf6N2E2_2844 0.89 -1.3
3,333,326 + +1.3
3,333,327 - -2.6

Or see this region's nucleotide sequence