Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1739 and Pf6N2E2_1740 overlap by 11 nucleotides Pf6N2E2_1740 and Pf6N2E2_1741 overlap by 4 nucleotides
Pf6N2E2_1739 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 2,051,415 to 2,052,698
_1739
Pf6N2E2_1740 - Transketolase, C-terminal section (EC 2.2.1.1), at 2,052,688 to 2,053,698
_1740
Pf6N2E2_1741 - Transketolase, N-terminal section (EC 2.2.1.1), at 2,053,695 to 2,054,579
_1741
Position (kb)
2052
2053
2054 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2051.706 kb on - strand, within Pf6N2E2_1739 at 2051.706 kb on - strand, within Pf6N2E2_1739 at 2051.707 kb on + strand, within Pf6N2E2_1739 at 2051.707 kb on + strand, within Pf6N2E2_1739 at 2051.707 kb on + strand, within Pf6N2E2_1739 at 2051.707 kb on + strand, within Pf6N2E2_1739 at 2051.708 kb on - strand, within Pf6N2E2_1739 at 2051.734 kb on + strand, within Pf6N2E2_1739 at 2051.735 kb on - strand, within Pf6N2E2_1739 at 2052.161 kb on - strand, within Pf6N2E2_1739 at 2052.265 kb on + strand, within Pf6N2E2_1739 at 2052.266 kb on - strand, within Pf6N2E2_1739 at 2052.266 kb on - strand, within Pf6N2E2_1739 at 2052.584 kb on - strand at 2052.782 kb on + strand at 2052.782 kb on + strand at 2052.845 kb on - strand, within Pf6N2E2_1740 at 2052.845 kb on - strand, within Pf6N2E2_1740 at 2053.313 kb on + strand, within Pf6N2E2_1740 at 2053.313 kb on + strand, within Pf6N2E2_1740 at 2053.371 kb on - strand, within Pf6N2E2_1740 at 2053.629 kb on - strand at 2053.629 kb on - strand at 2053.665 kb on - strand at 2053.792 kb on + strand, within Pf6N2E2_1741 at 2053.793 kb on - strand, within Pf6N2E2_1741 at 2054.107 kb on + strand, within Pf6N2E2_1741 at 2054.107 kb on + strand, within Pf6N2E2_1741 at 2054.118 kb on + strand, within Pf6N2E2_1741 at 2054.119 kb on - strand, within Pf6N2E2_1741 at 2054.399 kb on - strand, within Pf6N2E2_1741 at 2054.399 kb on - strand, within Pf6N2E2_1741 at 2054.399 kb on - strand, within Pf6N2E2_1741 at 2054.401 kb on + strand, within Pf6N2E2_1741 at 2054.444 kb on - strand, within Pf6N2E2_1741
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 2,051,706 - Pf6N2E2_1739 0.23 -1.0 2,051,706 - Pf6N2E2_1739 0.23 +2.0 2,051,707 + Pf6N2E2_1739 0.23 +1.0 2,051,707 + Pf6N2E2_1739 0.23 -0.0 2,051,707 + Pf6N2E2_1739 0.23 -1.2 2,051,707 + Pf6N2E2_1739 0.23 +0.2 2,051,708 - Pf6N2E2_1739 0.23 +0.5 2,051,734 + Pf6N2E2_1739 0.25 -0.0 2,051,735 - Pf6N2E2_1739 0.25 -1.3 2,052,161 - Pf6N2E2_1739 0.58 +2.0 2,052,265 + Pf6N2E2_1739 0.66 +0.1 2,052,266 - Pf6N2E2_1739 0.66 -1.3 2,052,266 - Pf6N2E2_1739 0.66 -0.0 2,052,584 - +1.2 2,052,782 + -0.6 2,052,782 + -2.0 2,052,845 - Pf6N2E2_1740 0.16 -0.0 2,052,845 - Pf6N2E2_1740 0.16 -1.0 2,053,313 + Pf6N2E2_1740 0.62 -1.5 2,053,313 + Pf6N2E2_1740 0.62 -0.3 2,053,371 - Pf6N2E2_1740 0.68 -1.9 2,053,629 - +0.4 2,053,629 - -0.4 2,053,665 - +0.6 2,053,792 + Pf6N2E2_1741 0.11 +1.0 2,053,793 - Pf6N2E2_1741 0.11 +1.7 2,054,107 + Pf6N2E2_1741 0.47 +1.0 2,054,107 + Pf6N2E2_1741 0.47 -1.2 2,054,118 + Pf6N2E2_1741 0.48 +0.2 2,054,119 - Pf6N2E2_1741 0.48 -0.2 2,054,399 - Pf6N2E2_1741 0.80 +0.2 2,054,399 - Pf6N2E2_1741 0.80 -0.6 2,054,399 - Pf6N2E2_1741 0.80 +0.8 2,054,401 + Pf6N2E2_1741 0.80 +0.4 2,054,444 - Pf6N2E2_1741 0.85 +0.6
Or see this region's nucleotide sequence