Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1740

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1739 and Pf6N2E2_1740 overlap by 11 nucleotidesPf6N2E2_1740 and Pf6N2E2_1741 overlap by 4 nucleotides Pf6N2E2_1739 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 2,051,415 to 2,052,698 _1739 Pf6N2E2_1740 - Transketolase, C-terminal section (EC 2.2.1.1), at 2,052,688 to 2,053,698 _1740 Pf6N2E2_1741 - Transketolase, N-terminal section (EC 2.2.1.1), at 2,053,695 to 2,054,579 _1741 Position (kb) 2052 2053 2054Strain fitness (log2 ratio) -2 -1 0 1 2at 2051.706 kb on - strand, within Pf6N2E2_1739at 2051.706 kb on - strand, within Pf6N2E2_1739at 2051.707 kb on + strand, within Pf6N2E2_1739at 2051.707 kb on + strand, within Pf6N2E2_1739at 2051.707 kb on + strand, within Pf6N2E2_1739at 2051.707 kb on + strand, within Pf6N2E2_1739at 2051.708 kb on - strand, within Pf6N2E2_1739at 2051.734 kb on + strand, within Pf6N2E2_1739at 2051.735 kb on - strand, within Pf6N2E2_1739at 2052.161 kb on - strand, within Pf6N2E2_1739at 2052.265 kb on + strand, within Pf6N2E2_1739at 2052.266 kb on - strand, within Pf6N2E2_1739at 2052.266 kb on - strand, within Pf6N2E2_1739at 2052.584 kb on - strandat 2052.782 kb on + strandat 2052.782 kb on + strandat 2052.845 kb on - strand, within Pf6N2E2_1740at 2052.845 kb on - strand, within Pf6N2E2_1740at 2053.313 kb on + strand, within Pf6N2E2_1740at 2053.313 kb on + strand, within Pf6N2E2_1740at 2053.371 kb on - strand, within Pf6N2E2_1740at 2053.629 kb on - strandat 2053.629 kb on - strandat 2053.665 kb on - strandat 2053.792 kb on + strand, within Pf6N2E2_1741at 2053.793 kb on - strand, within Pf6N2E2_1741at 2054.107 kb on + strand, within Pf6N2E2_1741at 2054.107 kb on + strand, within Pf6N2E2_1741at 2054.118 kb on + strand, within Pf6N2E2_1741at 2054.119 kb on - strand, within Pf6N2E2_1741at 2054.399 kb on - strand, within Pf6N2E2_1741at 2054.399 kb on - strand, within Pf6N2E2_1741at 2054.399 kb on - strand, within Pf6N2E2_1741at 2054.401 kb on + strand, within Pf6N2E2_1741at 2054.444 kb on - strand, within Pf6N2E2_1741

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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2,051,706 - Pf6N2E2_1739 0.23 -1.0
2,051,706 - Pf6N2E2_1739 0.23 +2.0
2,051,707 + Pf6N2E2_1739 0.23 +1.0
2,051,707 + Pf6N2E2_1739 0.23 -0.0
2,051,707 + Pf6N2E2_1739 0.23 -1.2
2,051,707 + Pf6N2E2_1739 0.23 +0.2
2,051,708 - Pf6N2E2_1739 0.23 +0.5
2,051,734 + Pf6N2E2_1739 0.25 -0.0
2,051,735 - Pf6N2E2_1739 0.25 -1.3
2,052,161 - Pf6N2E2_1739 0.58 +2.0
2,052,265 + Pf6N2E2_1739 0.66 +0.1
2,052,266 - Pf6N2E2_1739 0.66 -1.3
2,052,266 - Pf6N2E2_1739 0.66 -0.0
2,052,584 - +1.2
2,052,782 + -0.6
2,052,782 + -2.0
2,052,845 - Pf6N2E2_1740 0.16 -0.0
2,052,845 - Pf6N2E2_1740 0.16 -1.0
2,053,313 + Pf6N2E2_1740 0.62 -1.5
2,053,313 + Pf6N2E2_1740 0.62 -0.3
2,053,371 - Pf6N2E2_1740 0.68 -1.9
2,053,629 - +0.4
2,053,629 - -0.4
2,053,665 - +0.6
2,053,792 + Pf6N2E2_1741 0.11 +1.0
2,053,793 - Pf6N2E2_1741 0.11 +1.7
2,054,107 + Pf6N2E2_1741 0.47 +1.0
2,054,107 + Pf6N2E2_1741 0.47 -1.2
2,054,118 + Pf6N2E2_1741 0.48 +0.2
2,054,119 - Pf6N2E2_1741 0.48 -0.2
2,054,399 - Pf6N2E2_1741 0.80 +0.2
2,054,399 - Pf6N2E2_1741 0.80 -0.6
2,054,399 - Pf6N2E2_1741 0.80 +0.8
2,054,401 + Pf6N2E2_1741 0.80 +0.4
2,054,444 - Pf6N2E2_1741 0.85 +0.6

Or see this region's nucleotide sequence