Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1519 and Pf6N2E2_1520 are separated by 100 nucleotides Pf6N2E2_1520 and Pf6N2E2_1521 are separated by 66 nucleotides
Pf6N2E2_1519 - Metallo-beta-lactamase family protein, RNA-specific, at 1,775,146 to 1,776,501
_1519
Pf6N2E2_1520 - Universal stress protein family 5, at 1,776,602 to 1,777,492
_1520
Pf6N2E2_1521 - Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) @ Fructose-6-phosphate phosphoketolase (EC 4.1.2.22), at 1,777,559 to 1,779,931
_1521
Position (kb)
1776
1777
1778 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1775.657 kb on + strand, within Pf6N2E2_1519 at 1775.657 kb on + strand, within Pf6N2E2_1519 at 1775.657 kb on + strand, within Pf6N2E2_1519 at 1775.658 kb on - strand, within Pf6N2E2_1519 at 1775.747 kb on + strand, within Pf6N2E2_1519 at 1775.748 kb on - strand, within Pf6N2E2_1519 at 1775.876 kb on + strand, within Pf6N2E2_1519 at 1775.876 kb on + strand, within Pf6N2E2_1519 at 1775.877 kb on - strand, within Pf6N2E2_1519 at 1776.128 kb on + strand, within Pf6N2E2_1519 at 1776.129 kb on - strand, within Pf6N2E2_1519 at 1776.395 kb on + strand at 1776.527 kb on + strand at 1776.528 kb on - strand at 1776.633 kb on + strand at 1776.634 kb on - strand at 1776.891 kb on + strand, within Pf6N2E2_1520 at 1776.892 kb on - strand, within Pf6N2E2_1520 at 1776.909 kb on + strand, within Pf6N2E2_1520 at 1776.909 kb on + strand, within Pf6N2E2_1520 at 1776.909 kb on + strand, within Pf6N2E2_1520 at 1777.031 kb on + strand, within Pf6N2E2_1520 at 1777.032 kb on - strand, within Pf6N2E2_1520 at 1777.032 kb on - strand, within Pf6N2E2_1520 at 1777.071 kb on + strand, within Pf6N2E2_1520 at 1777.072 kb on - strand, within Pf6N2E2_1520 at 1777.072 kb on - strand, within Pf6N2E2_1520 at 1777.072 kb on - strand, within Pf6N2E2_1520 at 1777.138 kb on + strand, within Pf6N2E2_1520 at 1777.138 kb on + strand, within Pf6N2E2_1520 at 1777.151 kb on + strand, within Pf6N2E2_1520 at 1777.151 kb on + strand, within Pf6N2E2_1520 at 1777.152 kb on - strand, within Pf6N2E2_1520 at 1777.152 kb on - strand, within Pf6N2E2_1520 at 1777.308 kb on + strand, within Pf6N2E2_1520 at 1777.308 kb on + strand, within Pf6N2E2_1520 at 1777.308 kb on + strand, within Pf6N2E2_1520 at 1777.308 kb on + strand, within Pf6N2E2_1520 at 1777.309 kb on - strand, within Pf6N2E2_1520 at 1777.309 kb on - strand, within Pf6N2E2_1520 at 1777.309 kb on - strand, within Pf6N2E2_1520 at 1777.309 kb on - strand, within Pf6N2E2_1520 at 1777.627 kb on - strand at 1777.627 kb on - strand at 1777.627 kb on - strand at 1777.729 kb on - strand at 1777.830 kb on + strand, within Pf6N2E2_1521 at 1777.831 kb on - strand, within Pf6N2E2_1521 at 1777.831 kb on - strand, within Pf6N2E2_1521 at 1778.265 kb on + strand, within Pf6N2E2_1521 at 1778.266 kb on - strand, within Pf6N2E2_1521 at 1778.365 kb on + strand, within Pf6N2E2_1521 at 1778.365 kb on + strand, within Pf6N2E2_1521 at 1778.365 kb on + strand, within Pf6N2E2_1521 at 1778.365 kb on + strand, within Pf6N2E2_1521 at 1778.366 kb on - strand, within Pf6N2E2_1521 at 1778.366 kb on - strand, within Pf6N2E2_1521 at 1778.366 kb on - strand, within Pf6N2E2_1521 at 1778.373 kb on + strand, within Pf6N2E2_1521
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 1,775,657 + Pf6N2E2_1519 0.38 +0.4 1,775,657 + Pf6N2E2_1519 0.38 -0.9 1,775,657 + Pf6N2E2_1519 0.38 +0.0 1,775,658 - Pf6N2E2_1519 0.38 -0.3 1,775,747 + Pf6N2E2_1519 0.44 +0.7 1,775,748 - Pf6N2E2_1519 0.44 -1.1 1,775,876 + Pf6N2E2_1519 0.54 +1.3 1,775,876 + Pf6N2E2_1519 0.54 +0.3 1,775,877 - Pf6N2E2_1519 0.54 +0.7 1,776,128 + Pf6N2E2_1519 0.72 +1.1 1,776,129 - Pf6N2E2_1519 0.72 +1.4 1,776,395 + +0.4 1,776,527 + -0.7 1,776,528 - +0.7 1,776,633 + -0.5 1,776,634 - -0.1 1,776,891 + Pf6N2E2_1520 0.32 +1.1 1,776,892 - Pf6N2E2_1520 0.33 +1.2 1,776,909 + Pf6N2E2_1520 0.34 -2.1 1,776,909 + Pf6N2E2_1520 0.34 -1.7 1,776,909 + Pf6N2E2_1520 0.34 -0.4 1,777,031 + Pf6N2E2_1520 0.48 +1.3 1,777,032 - Pf6N2E2_1520 0.48 -0.1 1,777,032 - Pf6N2E2_1520 0.48 +0.1 1,777,071 + Pf6N2E2_1520 0.53 +1.5 1,777,072 - Pf6N2E2_1520 0.53 +0.4 1,777,072 - Pf6N2E2_1520 0.53 +0.5 1,777,072 - Pf6N2E2_1520 0.53 -0.4 1,777,138 + Pf6N2E2_1520 0.60 -0.8 1,777,138 + Pf6N2E2_1520 0.60 +0.3 1,777,151 + Pf6N2E2_1520 0.62 -0.3 1,777,151 + Pf6N2E2_1520 0.62 -0.3 1,777,152 - Pf6N2E2_1520 0.62 -0.7 1,777,152 - Pf6N2E2_1520 0.62 +0.9 1,777,308 + Pf6N2E2_1520 0.79 +0.9 1,777,308 + Pf6N2E2_1520 0.79 -0.9 1,777,308 + Pf6N2E2_1520 0.79 -0.9 1,777,308 + Pf6N2E2_1520 0.79 -0.9 1,777,309 - Pf6N2E2_1520 0.79 +0.5 1,777,309 - Pf6N2E2_1520 0.79 +0.9 1,777,309 - Pf6N2E2_1520 0.79 -0.2 1,777,309 - Pf6N2E2_1520 0.79 -1.3 1,777,627 - -1.1 1,777,627 - -0.6 1,777,627 - -0.4 1,777,729 - -0.7 1,777,830 + Pf6N2E2_1521 0.11 -2.6 1,777,831 - Pf6N2E2_1521 0.11 -1.1 1,777,831 - Pf6N2E2_1521 0.11 -0.4 1,778,265 + Pf6N2E2_1521 0.30 -1.7 1,778,266 - Pf6N2E2_1521 0.30 +0.4 1,778,365 + Pf6N2E2_1521 0.34 -0.1 1,778,365 + Pf6N2E2_1521 0.34 +1.9 1,778,365 + Pf6N2E2_1521 0.34 -0.8 1,778,365 + Pf6N2E2_1521 0.34 -0.1 1,778,366 - Pf6N2E2_1521 0.34 -1.3 1,778,366 - Pf6N2E2_1521 0.34 +1.9 1,778,366 - Pf6N2E2_1521 0.34 +0.2 1,778,373 + Pf6N2E2_1521 0.34 -1.7
Or see this region's nucleotide sequence