Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1520

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1519 and Pf6N2E2_1520 are separated by 100 nucleotidesPf6N2E2_1520 and Pf6N2E2_1521 are separated by 66 nucleotides Pf6N2E2_1519 - Metallo-beta-lactamase family protein, RNA-specific, at 1,775,146 to 1,776,501 _1519 Pf6N2E2_1520 - Universal stress protein family 5, at 1,776,602 to 1,777,492 _1520 Pf6N2E2_1521 - Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) @ Fructose-6-phosphate phosphoketolase (EC 4.1.2.22), at 1,777,559 to 1,779,931 _1521 Position (kb) 1776 1777 1778Strain fitness (log2 ratio) -2 -1 0 1 2at 1775.657 kb on + strand, within Pf6N2E2_1519at 1775.657 kb on + strand, within Pf6N2E2_1519at 1775.657 kb on + strand, within Pf6N2E2_1519at 1775.658 kb on - strand, within Pf6N2E2_1519at 1775.747 kb on + strand, within Pf6N2E2_1519at 1775.748 kb on - strand, within Pf6N2E2_1519at 1775.876 kb on + strand, within Pf6N2E2_1519at 1775.876 kb on + strand, within Pf6N2E2_1519at 1775.877 kb on - strand, within Pf6N2E2_1519at 1776.128 kb on + strand, within Pf6N2E2_1519at 1776.129 kb on - strand, within Pf6N2E2_1519at 1776.395 kb on + strandat 1776.527 kb on + strandat 1776.528 kb on - strandat 1776.633 kb on + strandat 1776.634 kb on - strandat 1776.891 kb on + strand, within Pf6N2E2_1520at 1776.892 kb on - strand, within Pf6N2E2_1520at 1776.909 kb on + strand, within Pf6N2E2_1520at 1776.909 kb on + strand, within Pf6N2E2_1520at 1776.909 kb on + strand, within Pf6N2E2_1520at 1777.031 kb on + strand, within Pf6N2E2_1520at 1777.032 kb on - strand, within Pf6N2E2_1520at 1777.032 kb on - strand, within Pf6N2E2_1520at 1777.071 kb on + strand, within Pf6N2E2_1520at 1777.072 kb on - strand, within Pf6N2E2_1520at 1777.072 kb on - strand, within Pf6N2E2_1520at 1777.072 kb on - strand, within Pf6N2E2_1520at 1777.138 kb on + strand, within Pf6N2E2_1520at 1777.138 kb on + strand, within Pf6N2E2_1520at 1777.151 kb on + strand, within Pf6N2E2_1520at 1777.151 kb on + strand, within Pf6N2E2_1520at 1777.152 kb on - strand, within Pf6N2E2_1520at 1777.152 kb on - strand, within Pf6N2E2_1520at 1777.308 kb on + strand, within Pf6N2E2_1520at 1777.308 kb on + strand, within Pf6N2E2_1520at 1777.308 kb on + strand, within Pf6N2E2_1520at 1777.308 kb on + strand, within Pf6N2E2_1520at 1777.309 kb on - strand, within Pf6N2E2_1520at 1777.309 kb on - strand, within Pf6N2E2_1520at 1777.309 kb on - strand, within Pf6N2E2_1520at 1777.309 kb on - strand, within Pf6N2E2_1520at 1777.627 kb on - strandat 1777.627 kb on - strandat 1777.627 kb on - strandat 1777.729 kb on - strandat 1777.830 kb on + strand, within Pf6N2E2_1521at 1777.831 kb on - strand, within Pf6N2E2_1521at 1777.831 kb on - strand, within Pf6N2E2_1521at 1778.265 kb on + strand, within Pf6N2E2_1521at 1778.266 kb on - strand, within Pf6N2E2_1521at 1778.365 kb on + strand, within Pf6N2E2_1521at 1778.365 kb on + strand, within Pf6N2E2_1521at 1778.365 kb on + strand, within Pf6N2E2_1521at 1778.365 kb on + strand, within Pf6N2E2_1521at 1778.366 kb on - strand, within Pf6N2E2_1521at 1778.366 kb on - strand, within Pf6N2E2_1521at 1778.366 kb on - strand, within Pf6N2E2_1521at 1778.373 kb on + strand, within Pf6N2E2_1521

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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1,775,657 + Pf6N2E2_1519 0.38 +0.4
1,775,657 + Pf6N2E2_1519 0.38 -0.9
1,775,657 + Pf6N2E2_1519 0.38 +0.0
1,775,658 - Pf6N2E2_1519 0.38 -0.3
1,775,747 + Pf6N2E2_1519 0.44 +0.7
1,775,748 - Pf6N2E2_1519 0.44 -1.1
1,775,876 + Pf6N2E2_1519 0.54 +1.3
1,775,876 + Pf6N2E2_1519 0.54 +0.3
1,775,877 - Pf6N2E2_1519 0.54 +0.7
1,776,128 + Pf6N2E2_1519 0.72 +1.1
1,776,129 - Pf6N2E2_1519 0.72 +1.4
1,776,395 + +0.4
1,776,527 + -0.7
1,776,528 - +0.7
1,776,633 + -0.5
1,776,634 - -0.1
1,776,891 + Pf6N2E2_1520 0.32 +1.1
1,776,892 - Pf6N2E2_1520 0.33 +1.2
1,776,909 + Pf6N2E2_1520 0.34 -2.1
1,776,909 + Pf6N2E2_1520 0.34 -1.7
1,776,909 + Pf6N2E2_1520 0.34 -0.4
1,777,031 + Pf6N2E2_1520 0.48 +1.3
1,777,032 - Pf6N2E2_1520 0.48 -0.1
1,777,032 - Pf6N2E2_1520 0.48 +0.1
1,777,071 + Pf6N2E2_1520 0.53 +1.5
1,777,072 - Pf6N2E2_1520 0.53 +0.4
1,777,072 - Pf6N2E2_1520 0.53 +0.5
1,777,072 - Pf6N2E2_1520 0.53 -0.4
1,777,138 + Pf6N2E2_1520 0.60 -0.8
1,777,138 + Pf6N2E2_1520 0.60 +0.3
1,777,151 + Pf6N2E2_1520 0.62 -0.3
1,777,151 + Pf6N2E2_1520 0.62 -0.3
1,777,152 - Pf6N2E2_1520 0.62 -0.7
1,777,152 - Pf6N2E2_1520 0.62 +0.9
1,777,308 + Pf6N2E2_1520 0.79 +0.9
1,777,308 + Pf6N2E2_1520 0.79 -0.9
1,777,308 + Pf6N2E2_1520 0.79 -0.9
1,777,308 + Pf6N2E2_1520 0.79 -0.9
1,777,309 - Pf6N2E2_1520 0.79 +0.5
1,777,309 - Pf6N2E2_1520 0.79 +0.9
1,777,309 - Pf6N2E2_1520 0.79 -0.2
1,777,309 - Pf6N2E2_1520 0.79 -1.3
1,777,627 - -1.1
1,777,627 - -0.6
1,777,627 - -0.4
1,777,729 - -0.7
1,777,830 + Pf6N2E2_1521 0.11 -2.6
1,777,831 - Pf6N2E2_1521 0.11 -1.1
1,777,831 - Pf6N2E2_1521 0.11 -0.4
1,778,265 + Pf6N2E2_1521 0.30 -1.7
1,778,266 - Pf6N2E2_1521 0.30 +0.4
1,778,365 + Pf6N2E2_1521 0.34 -0.1
1,778,365 + Pf6N2E2_1521 0.34 +1.9
1,778,365 + Pf6N2E2_1521 0.34 -0.8
1,778,365 + Pf6N2E2_1521 0.34 -0.1
1,778,366 - Pf6N2E2_1521 0.34 -1.3
1,778,366 - Pf6N2E2_1521 0.34 +1.9
1,778,366 - Pf6N2E2_1521 0.34 +0.2
1,778,373 + Pf6N2E2_1521 0.34 -1.7

Or see this region's nucleotide sequence