Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1507 and Pf6N2E2_1508 overlap by 4 nucleotides Pf6N2E2_1508 and Pf6N2E2_1509 are separated by 131 nucleotides Pf6N2E2_1509 and Pf6N2E2_1510 are separated by 86 nucleotides
Pf6N2E2_1507 - Sensor protein basS/pmrB (EC 2.7.3.-), at 1,761,328 to 1,762,686
_1507
Pf6N2E2_1508 - DNA-binding response regulator, at 1,762,683 to 1,763,342
_1508
Pf6N2E2_1509 - FIG00450070: hypothetical protein, at 1,763,474 to 1,763,797
_1509
Pf6N2E2_1510 - FIG00450095: hypothetical protein, at 1,763,884 to 1,764,354
_1510
Position (kb)
1762
1763
1764 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1761.693 kb on - strand, within Pf6N2E2_1507 at 1761.926 kb on + strand, within Pf6N2E2_1507 at 1761.966 kb on + strand, within Pf6N2E2_1507 at 1761.966 kb on + strand, within Pf6N2E2_1507 at 1761.966 kb on + strand, within Pf6N2E2_1507 at 1761.967 kb on - strand, within Pf6N2E2_1507 at 1761.967 kb on - strand, within Pf6N2E2_1507 at 1761.967 kb on - strand, within Pf6N2E2_1507 at 1762.139 kb on + strand, within Pf6N2E2_1507 at 1762.230 kb on + strand, within Pf6N2E2_1507 at 1762.231 kb on - strand, within Pf6N2E2_1507 at 1762.231 kb on - strand, within Pf6N2E2_1507 at 1762.319 kb on + strand, within Pf6N2E2_1507 at 1762.320 kb on - strand, within Pf6N2E2_1507 at 1762.433 kb on + strand, within Pf6N2E2_1507 at 1762.433 kb on + strand, within Pf6N2E2_1507 at 1762.434 kb on - strand, within Pf6N2E2_1507 at 1762.434 kb on - strand, within Pf6N2E2_1507 at 1762.514 kb on - strand, within Pf6N2E2_1507 at 1762.514 kb on - strand, within Pf6N2E2_1507 at 1762.765 kb on + strand, within Pf6N2E2_1508 at 1762.765 kb on + strand, within Pf6N2E2_1508 at 1762.766 kb on - strand, within Pf6N2E2_1508 at 1762.766 kb on - strand, within Pf6N2E2_1508 at 1763.210 kb on - strand, within Pf6N2E2_1508 at 1763.210 kb on - strand, within Pf6N2E2_1508 at 1763.331 kb on + strand at 1763.387 kb on + strand at 1763.440 kb on - strand at 1763.508 kb on + strand, within Pf6N2E2_1509 at 1763.508 kb on + strand, within Pf6N2E2_1509 at 1763.508 kb on + strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.509 kb on - strand, within Pf6N2E2_1509 at 1763.654 kb on + strand, within Pf6N2E2_1509 at 1763.654 kb on + strand, within Pf6N2E2_1509 at 1763.654 kb on + strand, within Pf6N2E2_1509 at 1763.742 kb on - strand, within Pf6N2E2_1509 at 1763.957 kb on + strand, within Pf6N2E2_1510 at 1763.958 kb on - strand, within Pf6N2E2_1510 at 1763.958 kb on - strand, within Pf6N2E2_1510 at 1763.983 kb on + strand, within Pf6N2E2_1510 at 1764.001 kb on + strand, within Pf6N2E2_1510 at 1764.002 kb on - strand, within Pf6N2E2_1510 at 1764.002 kb on - strand, within Pf6N2E2_1510 at 1764.002 kb on - strand, within Pf6N2E2_1510 at 1764.013 kb on + strand, within Pf6N2E2_1510 at 1764.014 kb on - strand, within Pf6N2E2_1510 at 1764.076 kb on + strand, within Pf6N2E2_1510 at 1764.076 kb on + strand, within Pf6N2E2_1510 at 1764.077 kb on - strand, within Pf6N2E2_1510 at 1764.079 kb on + strand, within Pf6N2E2_1510 at 1764.079 kb on + strand, within Pf6N2E2_1510 at 1764.080 kb on - strand, within Pf6N2E2_1510 at 1764.130 kb on + strand at 1764.321 kb on + strand at 1764.321 kb on + strand at 1764.322 kb on - strand at 1764.322 kb on - strand at 1764.339 kb on + strand at 1764.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 1,761,693 - Pf6N2E2_1507 0.27 +1.5 1,761,926 + Pf6N2E2_1507 0.44 +0.9 1,761,966 + Pf6N2E2_1507 0.47 -0.6 1,761,966 + Pf6N2E2_1507 0.47 +0.1 1,761,966 + Pf6N2E2_1507 0.47 -0.1 1,761,967 - Pf6N2E2_1507 0.47 -0.7 1,761,967 - Pf6N2E2_1507 0.47 -0.1 1,761,967 - Pf6N2E2_1507 0.47 +0.2 1,762,139 + Pf6N2E2_1507 0.60 +0.9 1,762,230 + Pf6N2E2_1507 0.66 +0.2 1,762,231 - Pf6N2E2_1507 0.66 -0.9 1,762,231 - Pf6N2E2_1507 0.66 +0.6 1,762,319 + Pf6N2E2_1507 0.73 -0.1 1,762,320 - Pf6N2E2_1507 0.73 -0.4 1,762,433 + Pf6N2E2_1507 0.81 -0.1 1,762,433 + Pf6N2E2_1507 0.81 -0.4 1,762,434 - Pf6N2E2_1507 0.81 -0.4 1,762,434 - Pf6N2E2_1507 0.81 +0.6 1,762,514 - Pf6N2E2_1507 0.87 +1.6 1,762,514 - Pf6N2E2_1507 0.87 +0.9 1,762,765 + Pf6N2E2_1508 0.12 -1.1 1,762,765 + Pf6N2E2_1508 0.12 -0.3 1,762,766 - Pf6N2E2_1508 0.13 -1.9 1,762,766 - Pf6N2E2_1508 0.13 -0.4 1,763,210 - Pf6N2E2_1508 0.80 -0.6 1,763,210 - Pf6N2E2_1508 0.80 -1.7 1,763,331 + +0.1 1,763,387 + -0.6 1,763,440 - -0.4 1,763,508 + Pf6N2E2_1509 0.10 -0.1 1,763,508 + Pf6N2E2_1509 0.10 +0.3 1,763,508 + Pf6N2E2_1509 0.10 +0.4 1,763,509 - Pf6N2E2_1509 0.11 -1.4 1,763,509 - Pf6N2E2_1509 0.11 -0.5 1,763,509 - Pf6N2E2_1509 0.11 +0.2 1,763,509 - Pf6N2E2_1509 0.11 -0.1 1,763,509 - Pf6N2E2_1509 0.11 +0.9 1,763,654 + Pf6N2E2_1509 0.56 +1.3 1,763,654 + Pf6N2E2_1509 0.56 +3.2 1,763,654 + Pf6N2E2_1509 0.56 -0.5 1,763,742 - Pf6N2E2_1509 0.83 -2.4 1,763,957 + Pf6N2E2_1510 0.15 +0.9 1,763,958 - Pf6N2E2_1510 0.16 +0.9 1,763,958 - Pf6N2E2_1510 0.16 +0.7 1,763,983 + Pf6N2E2_1510 0.21 -0.7 1,764,001 + Pf6N2E2_1510 0.25 -0.6 1,764,002 - Pf6N2E2_1510 0.25 +0.0 1,764,002 - Pf6N2E2_1510 0.25 -1.7 1,764,002 - Pf6N2E2_1510 0.25 +0.9 1,764,013 + Pf6N2E2_1510 0.27 +2.7 1,764,014 - Pf6N2E2_1510 0.28 +0.6 1,764,076 + Pf6N2E2_1510 0.41 -0.1 1,764,076 + Pf6N2E2_1510 0.41 +0.3 1,764,077 - Pf6N2E2_1510 0.41 +0.9 1,764,079 + Pf6N2E2_1510 0.41 -2.3 1,764,079 + Pf6N2E2_1510 0.41 -2.6 1,764,080 - Pf6N2E2_1510 0.42 -0.2 1,764,130 + +0.9 1,764,321 + +0.2 1,764,321 + -0.1 1,764,322 - -1.9 1,764,322 - -1.7 1,764,339 + +0.9 1,764,340 - +0.0
Or see this region's nucleotide sequence