Experiment: Cobalt chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4801 and Pf6N2E2_4802 are separated by 300 nucleotides Pf6N2E2_4802 and Pf6N2E2_4803 are separated by 32 nucleotides Pf6N2E2_4803 and Pf6N2E2_4804 overlap by 1 nucleotides
Pf6N2E2_4801 - yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) , at 5,550,673 to 5,552,595
_4801
Pf6N2E2_4802 - Thiosulfate sulfurtransferase GlpE (EC 2.8.1.1), at 5,552,896 to 5,553,225
_4802
Pf6N2E2_4803 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41), at 5,553,258 to 5,554,133
_4803
Pf6N2E2_4804 - ApaG protein, at 5,554,133 to 5,554,513
_4804
Position (kb)
5552
5553
5554 Strain fitness (log2 ratio)
-1
0
1
2 at 5551.944 kb on + strand, within Pf6N2E2_4801 at 5551.944 kb on + strand, within Pf6N2E2_4801 at 5552.010 kb on - strand, within Pf6N2E2_4801 at 5552.088 kb on + strand, within Pf6N2E2_4801 at 5552.088 kb on + strand, within Pf6N2E2_4801 at 5552.089 kb on - strand, within Pf6N2E2_4801 at 5552.161 kb on + strand, within Pf6N2E2_4801 at 5552.198 kb on + strand, within Pf6N2E2_4801 at 5552.198 kb on + strand, within Pf6N2E2_4801 at 5552.198 kb on + strand, within Pf6N2E2_4801 at 5552.199 kb on - strand, within Pf6N2E2_4801 at 5552.199 kb on - strand, within Pf6N2E2_4801 at 5552.250 kb on + strand, within Pf6N2E2_4801 at 5552.250 kb on + strand, within Pf6N2E2_4801 at 5552.250 kb on + strand, within Pf6N2E2_4801 at 5552.251 kb on - strand, within Pf6N2E2_4801 at 5552.251 kb on - strand, within Pf6N2E2_4801 at 5552.276 kb on + strand, within Pf6N2E2_4801 at 5552.276 kb on + strand, within Pf6N2E2_4801 at 5552.277 kb on - strand, within Pf6N2E2_4801 at 5552.277 kb on - strand, within Pf6N2E2_4801 at 5552.277 kb on - strand, within Pf6N2E2_4801 at 5552.277 kb on - strand, within Pf6N2E2_4801 at 5552.277 kb on - strand, within Pf6N2E2_4801 at 5552.324 kb on + strand, within Pf6N2E2_4801 at 5552.324 kb on + strand, within Pf6N2E2_4801 at 5552.324 kb on + strand, within Pf6N2E2_4801 at 5552.324 kb on + strand, within Pf6N2E2_4801 at 5552.492 kb on + strand at 5552.492 kb on + strand at 5552.492 kb on + strand at 5552.493 kb on - strand at 5552.493 kb on - strand at 5552.493 kb on - strand at 5552.526 kb on - strand at 5552.540 kb on + strand at 5552.540 kb on + strand at 5552.541 kb on - strand at 5552.614 kb on - strand at 5552.679 kb on + strand at 5552.782 kb on - strand at 5552.787 kb on + strand at 5552.806 kb on + strand at 5552.807 kb on - strand at 5552.807 kb on - strand at 5552.817 kb on + strand at 5552.817 kb on + strand at 5552.817 kb on + strand at 5552.817 kb on + strand at 5552.817 kb on + strand at 5552.817 kb on + strand at 5552.817 kb on + strand at 5552.818 kb on - strand at 5552.821 kb on + strand at 5552.821 kb on + strand at 5552.821 kb on + strand at 5552.821 kb on + strand at 5552.821 kb on + strand at 5552.822 kb on - strand at 5552.822 kb on - strand at 5552.822 kb on - strand at 5552.822 kb on - strand at 5552.825 kb on + strand at 5552.825 kb on + strand at 5552.825 kb on + strand at 5552.825 kb on + strand at 5552.826 kb on - strand at 5552.826 kb on - strand at 5552.826 kb on - strand at 5552.826 kb on - strand at 5552.826 kb on - strand at 5552.826 kb on - strand at 5552.826 kb on - strand at 5552.826 kb on - strand at 5552.829 kb on + strand at 5552.829 kb on + strand at 5552.829 kb on + strand at 5552.890 kb on - strand at 5552.930 kb on + strand, within Pf6N2E2_4802 at 5552.930 kb on + strand, within Pf6N2E2_4802 at 5552.931 kb on - strand, within Pf6N2E2_4802 at 5552.969 kb on + strand, within Pf6N2E2_4802 at 5552.969 kb on + strand, within Pf6N2E2_4802 at 5552.969 kb on + strand, within Pf6N2E2_4802 at 5552.969 kb on + strand, within Pf6N2E2_4802 at 5552.999 kb on + strand, within Pf6N2E2_4802 at 5553.000 kb on - strand, within Pf6N2E2_4802 at 5553.000 kb on - strand, within Pf6N2E2_4802 at 5553.032 kb on + strand, within Pf6N2E2_4802 at 5553.032 kb on + strand, within Pf6N2E2_4802 at 5553.033 kb on - strand, within Pf6N2E2_4802 at 5553.049 kb on - strand, within Pf6N2E2_4802 at 5553.049 kb on - strand, within Pf6N2E2_4802 at 5553.239 kb on - strand at 5553.239 kb on - strand at 5553.239 kb on - strand at 5553.239 kb on - strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.339 kb on + strand at 5553.340 kb on - strand at 5553.340 kb on - strand at 5553.340 kb on - strand at 5553.340 kb on - strand at 5553.340 kb on - strand at 5553.340 kb on - strand at 5553.340 kb on - strand at 5553.595 kb on + strand, within Pf6N2E2_4803 at 5553.596 kb on - strand, within Pf6N2E2_4803 at 5553.664 kb on + strand, within Pf6N2E2_4803 at 5553.664 kb on + strand, within Pf6N2E2_4803 at 5554.124 kb on - strand at 5554.124 kb on - strand at 5554.135 kb on - strand at 5554.216 kb on - strand, within Pf6N2E2_4804 at 5554.216 kb on - strand, within Pf6N2E2_4804
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM remove 5,551,944 + Pf6N2E2_4801 0.66 -0.0 5,551,944 + Pf6N2E2_4801 0.66 +0.5 5,552,010 - Pf6N2E2_4801 0.70 +0.6 5,552,088 + Pf6N2E2_4801 0.74 -0.4 5,552,088 + Pf6N2E2_4801 0.74 +0.5 5,552,089 - Pf6N2E2_4801 0.74 -1.4 5,552,161 + Pf6N2E2_4801 0.77 +1.0 5,552,198 + Pf6N2E2_4801 0.79 +1.3 5,552,198 + Pf6N2E2_4801 0.79 -0.7 5,552,198 + Pf6N2E2_4801 0.79 +0.8 5,552,199 - Pf6N2E2_4801 0.79 +0.9 5,552,199 - Pf6N2E2_4801 0.79 -0.4 5,552,250 + Pf6N2E2_4801 0.82 +1.5 5,552,250 + Pf6N2E2_4801 0.82 +0.6 5,552,250 + Pf6N2E2_4801 0.82 +0.8 5,552,251 - Pf6N2E2_4801 0.82 -0.7 5,552,251 - Pf6N2E2_4801 0.82 -0.8 5,552,276 + Pf6N2E2_4801 0.83 -0.4 5,552,276 + Pf6N2E2_4801 0.83 +0.4 5,552,277 - Pf6N2E2_4801 0.83 +0.1 5,552,277 - Pf6N2E2_4801 0.83 -0.6 5,552,277 - Pf6N2E2_4801 0.83 +0.3 5,552,277 - Pf6N2E2_4801 0.83 +0.0 5,552,277 - Pf6N2E2_4801 0.83 +0.7 5,552,324 + Pf6N2E2_4801 0.86 -0.2 5,552,324 + Pf6N2E2_4801 0.86 -0.2 5,552,324 + Pf6N2E2_4801 0.86 +0.6 5,552,324 + Pf6N2E2_4801 0.86 -0.2 5,552,492 + -0.2 5,552,492 + +1.5 5,552,492 + +0.4 5,552,493 - +0.7 5,552,493 - -0.0 5,552,493 - -1.4 5,552,526 - -0.3 5,552,540 + -0.3 5,552,540 + -0.5 5,552,541 - +0.1 5,552,614 - -0.3 5,552,679 + -1.0 5,552,782 - +1.6 5,552,787 + +0.5 5,552,806 + -0.0 5,552,807 - +1.1 5,552,807 - -0.1 5,552,817 + +0.9 5,552,817 + -0.4 5,552,817 + -0.2 5,552,817 + +0.3 5,552,817 + -0.3 5,552,817 + +0.1 5,552,817 + +0.8 5,552,818 - +0.3 5,552,821 + +0.3 5,552,821 + +0.6 5,552,821 + -0.0 5,552,821 + +0.3 5,552,821 + -0.3 5,552,822 - -1.3 5,552,822 - -0.4 5,552,822 - +0.7 5,552,822 - -0.7 5,552,825 + +0.6 5,552,825 + +0.2 5,552,825 + -0.5 5,552,825 + -0.4 5,552,826 - +1.7 5,552,826 - -0.3 5,552,826 - +0.3 5,552,826 - +0.1 5,552,826 - +1.3 5,552,826 - -0.3 5,552,826 - -0.3 5,552,826 - +0.5 5,552,829 + -0.6 5,552,829 + +1.7 5,552,829 + +0.4 5,552,890 - +0.3 5,552,930 + Pf6N2E2_4802 0.10 +0.1 5,552,930 + Pf6N2E2_4802 0.10 +0.6 5,552,931 - Pf6N2E2_4802 0.11 +1.3 5,552,969 + Pf6N2E2_4802 0.22 +0.1 5,552,969 + Pf6N2E2_4802 0.22 -0.1 5,552,969 + Pf6N2E2_4802 0.22 +1.1 5,552,969 + Pf6N2E2_4802 0.22 +1.3 5,552,999 + Pf6N2E2_4802 0.31 +1.3 5,553,000 - Pf6N2E2_4802 0.32 -0.3 5,553,000 - Pf6N2E2_4802 0.32 -0.2 5,553,032 + Pf6N2E2_4802 0.41 +0.4 5,553,032 + Pf6N2E2_4802 0.41 +0.6 5,553,033 - Pf6N2E2_4802 0.42 +0.9 5,553,049 - Pf6N2E2_4802 0.46 +2.1 5,553,049 - Pf6N2E2_4802 0.46 +0.7 5,553,239 - -0.2 5,553,239 - +0.0 5,553,239 - -0.5 5,553,239 - -0.9 5,553,339 + +1.4 5,553,339 + +2.1 5,553,339 + +1.9 5,553,339 + +1.1 5,553,339 + +2.6 5,553,339 + +1.2 5,553,339 + +1.9 5,553,339 + +1.8 5,553,339 + +2.1 5,553,339 + +2.6 5,553,339 + +1.3 5,553,339 + +0.6 5,553,339 + +2.7 5,553,339 + +0.8 5,553,340 - +0.2 5,553,340 - -0.3 5,553,340 - +0.8 5,553,340 - -1.2 5,553,340 - +0.3 5,553,340 - +0.4 5,553,340 - +0.2 5,553,595 + Pf6N2E2_4803 0.38 +2.1 5,553,596 - Pf6N2E2_4803 0.39 -0.3 5,553,664 + Pf6N2E2_4803 0.46 +1.3 5,553,664 + Pf6N2E2_4803 0.46 +0.3 5,554,124 - -0.2 5,554,124 - +0.1 5,554,135 - +1.3 5,554,216 - Pf6N2E2_4804 0.22 -1.1 5,554,216 - Pf6N2E2_4804 0.22 -0.1
Or see this region's nucleotide sequence