Experiment: Cobalt chloride 0.4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1731 and Pf6N2E2_1732 are separated by 345 nucleotides Pf6N2E2_1732 and Pf6N2E2_1733 are separated by 23 nucleotides
Pf6N2E2_1731 - Transcriptional regulator, LysR family, at 2,043,541 to 2,044,464
_1731
Pf6N2E2_1732 - hypothetical protein, at 2,044,810 to 2,045,049
_1732
Pf6N2E2_1733 - Oligopeptide transporter, OPT family, at 2,045,073 to 2,046,818
_1733
Position (kb)
2044
2045
2046 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2043.934 kb on + strand, within Pf6N2E2_1731 at 2043.934 kb on + strand, within Pf6N2E2_1731 at 2043.935 kb on - strand, within Pf6N2E2_1731 at 2043.935 kb on - strand, within Pf6N2E2_1731 at 2043.935 kb on - strand, within Pf6N2E2_1731 at 2044.068 kb on + strand, within Pf6N2E2_1731 at 2044.116 kb on + strand, within Pf6N2E2_1731 at 2044.116 kb on + strand, within Pf6N2E2_1731 at 2044.117 kb on - strand, within Pf6N2E2_1731 at 2044.117 kb on - strand, within Pf6N2E2_1731 at 2044.117 kb on - strand, within Pf6N2E2_1731 at 2044.117 kb on - strand, within Pf6N2E2_1731 at 2044.117 kb on - strand, within Pf6N2E2_1731 at 2044.117 kb on - strand, within Pf6N2E2_1731 at 2044.117 kb on - strand, within Pf6N2E2_1731 at 2044.147 kb on + strand, within Pf6N2E2_1731 at 2044.147 kb on + strand, within Pf6N2E2_1731 at 2044.147 kb on + strand, within Pf6N2E2_1731 at 2044.190 kb on + strand, within Pf6N2E2_1731 at 2044.303 kb on + strand, within Pf6N2E2_1731 at 2044.304 kb on - strand, within Pf6N2E2_1731 at 2044.304 kb on - strand, within Pf6N2E2_1731 at 2044.304 kb on - strand, within Pf6N2E2_1731 at 2044.360 kb on + strand, within Pf6N2E2_1731 at 2044.360 kb on + strand, within Pf6N2E2_1731 at 2044.360 kb on + strand, within Pf6N2E2_1731 at 2044.360 kb on + strand, within Pf6N2E2_1731 at 2044.360 kb on + strand, within Pf6N2E2_1731 at 2044.360 kb on + strand, within Pf6N2E2_1731 at 2044.361 kb on - strand, within Pf6N2E2_1731 at 2044.361 kb on - strand, within Pf6N2E2_1731 at 2044.361 kb on - strand, within Pf6N2E2_1731 at 2044.361 kb on - strand, within Pf6N2E2_1731 at 2044.361 kb on - strand, within Pf6N2E2_1731 at 2044.462 kb on + strand at 2044.462 kb on + strand at 2044.463 kb on - strand at 2044.484 kb on - strand at 2044.775 kb on + strand at 2044.775 kb on + strand at 2044.776 kb on - strand at 2044.780 kb on - strand at 2044.822 kb on + strand at 2044.822 kb on + strand at 2044.823 kb on - strand at 2044.974 kb on + strand, within Pf6N2E2_1732 at 2044.974 kb on + strand, within Pf6N2E2_1732 at 2044.974 kb on + strand, within Pf6N2E2_1732 at 2044.974 kb on + strand, within Pf6N2E2_1732 at 2044.974 kb on + strand, within Pf6N2E2_1732 at 2044.974 kb on + strand, within Pf6N2E2_1732 at 2044.974 kb on + strand, within Pf6N2E2_1732 at 2044.975 kb on - strand, within Pf6N2E2_1732 at 2044.975 kb on - strand, within Pf6N2E2_1732 at 2044.975 kb on - strand, within Pf6N2E2_1732 at 2045.075 kb on - strand at 2045.087 kb on + strand at 2045.523 kb on - strand, within Pf6N2E2_1733 at 2045.534 kb on + strand, within Pf6N2E2_1733
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.4 mM remove 2,043,934 + Pf6N2E2_1731 0.43 -0.6 2,043,934 + Pf6N2E2_1731 0.43 +1.3 2,043,935 - Pf6N2E2_1731 0.43 +0.7 2,043,935 - Pf6N2E2_1731 0.43 +1.3 2,043,935 - Pf6N2E2_1731 0.43 +1.1 2,044,068 + Pf6N2E2_1731 0.57 +1.6 2,044,116 + Pf6N2E2_1731 0.62 -0.1 2,044,116 + Pf6N2E2_1731 0.62 -0.6 2,044,117 - Pf6N2E2_1731 0.62 -1.0 2,044,117 - Pf6N2E2_1731 0.62 +2.3 2,044,117 - Pf6N2E2_1731 0.62 +0.7 2,044,117 - Pf6N2E2_1731 0.62 -0.4 2,044,117 - Pf6N2E2_1731 0.62 -0.1 2,044,117 - Pf6N2E2_1731 0.62 +0.2 2,044,117 - Pf6N2E2_1731 0.62 +1.1 2,044,147 + Pf6N2E2_1731 0.66 -0.1 2,044,147 + Pf6N2E2_1731 0.66 +1.0 2,044,147 + Pf6N2E2_1731 0.66 +0.4 2,044,190 + Pf6N2E2_1731 0.70 +0.1 2,044,303 + Pf6N2E2_1731 0.82 +0.2 2,044,304 - Pf6N2E2_1731 0.83 +0.2 2,044,304 - Pf6N2E2_1731 0.83 +1.7 2,044,304 - Pf6N2E2_1731 0.83 -0.5 2,044,360 + Pf6N2E2_1731 0.89 +0.3 2,044,360 + Pf6N2E2_1731 0.89 -0.5 2,044,360 + Pf6N2E2_1731 0.89 +0.7 2,044,360 + Pf6N2E2_1731 0.89 +0.4 2,044,360 + Pf6N2E2_1731 0.89 -0.5 2,044,360 + Pf6N2E2_1731 0.89 -0.6 2,044,361 - Pf6N2E2_1731 0.89 -0.3 2,044,361 - Pf6N2E2_1731 0.89 +0.7 2,044,361 - Pf6N2E2_1731 0.89 +0.1 2,044,361 - Pf6N2E2_1731 0.89 +1.7 2,044,361 - Pf6N2E2_1731 0.89 -0.3 2,044,462 + +1.1 2,044,462 + -0.4 2,044,463 - -0.3 2,044,484 - +0.4 2,044,775 + +0.4 2,044,775 + -1.6 2,044,776 - -0.1 2,044,780 - -0.1 2,044,822 + +0.7 2,044,822 + +0.7 2,044,823 - +1.4 2,044,974 + Pf6N2E2_1732 0.68 -0.3 2,044,974 + Pf6N2E2_1732 0.68 +1.7 2,044,974 + Pf6N2E2_1732 0.68 -0.3 2,044,974 + Pf6N2E2_1732 0.68 -0.3 2,044,974 + Pf6N2E2_1732 0.68 -1.3 2,044,974 + Pf6N2E2_1732 0.68 +0.2 2,044,974 + Pf6N2E2_1732 0.68 -0.6 2,044,975 - Pf6N2E2_1732 0.69 -0.3 2,044,975 - Pf6N2E2_1732 0.69 -2.5 2,044,975 - Pf6N2E2_1732 0.69 +0.7 2,045,075 - -0.1 2,045,087 + +0.1 2,045,523 - Pf6N2E2_1733 0.26 +0.2 2,045,534 + Pf6N2E2_1733 0.26 +0.7
Or see this region's nucleotide sequence