Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3695

Experiment: Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3693 and Pf6N2E2_3694 are separated by 286 nucleotidesPf6N2E2_3694 and Pf6N2E2_3695 are separated by 286 nucleotidesPf6N2E2_3695 and Pf6N2E2_3696 are separated by 159 nucleotidesPf6N2E2_3696 and Pf6N2E2_3697 are separated by 133 nucleotides Pf6N2E2_3693 - Helix-turn-helix motif, at 4,310,889 to 4,311,026 _3693 Pf6N2E2_3694 - Helix-turn-helix motif, at 4,311,313 to 4,311,450 _3694 Pf6N2E2_3695 - Helix-turn-helix motif, at 4,311,737 to 4,312,138 _3695 Pf6N2E2_3696 - hypothetical protein, at 4,312,298 to 4,312,576 _3696 Pf6N2E2_3697 - Transcriptional regulator, LysR family, at 4,312,710 to 4,313,576 _3697 Position (kb) 4311 4312 4313Strain fitness (log2 ratio) -2 -1 0 1at 4311.726 kb on - strandat 4311.821 kb on + strand, within Pf6N2E2_3695at 4312.056 kb on + strand, within Pf6N2E2_3695at 4312.056 kb on + strand, within Pf6N2E2_3695at 4312.056 kb on + strand, within Pf6N2E2_3695at 4312.056 kb on + strand, within Pf6N2E2_3695at 4312.057 kb on - strand, within Pf6N2E2_3695at 4312.169 kb on + strandat 4312.170 kb on - strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.175 kb on + strandat 4312.176 kb on - strandat 4312.176 kb on - strandat 4312.176 kb on - strandat 4312.204 kb on + strandat 4312.238 kb on + strandat 4312.239 kb on - strandat 4312.259 kb on - strandat 4312.309 kb on + strandat 4312.310 kb on - strandat 4312.464 kb on + strand, within Pf6N2E2_3696at 4312.600 kb on + strandat 4312.600 kb on + strandat 4312.600 kb on + strandat 4312.600 kb on + strandat 4312.600 kb on + strandat 4312.601 kb on - strandat 4312.601 kb on - strandat 4312.601 kb on - strandat 4312.601 kb on - strandat 4312.761 kb on - strandat 4313.015 kb on - strand, within Pf6N2E2_3697at 4313.015 kb on - strand, within Pf6N2E2_3697at 4313.085 kb on + strand, within Pf6N2E2_3697at 4313.099 kb on - strand, within Pf6N2E2_3697at 4313.129 kb on + strand, within Pf6N2E2_3697at 4313.129 kb on + strand, within Pf6N2E2_3697at 4313.129 kb on + strand, within Pf6N2E2_3697at 4313.130 kb on - strand, within Pf6N2E2_3697at 4313.130 kb on - strand, within Pf6N2E2_3697

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM
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4,311,726 - -1.1
4,311,821 + Pf6N2E2_3695 0.21 -0.7
4,312,056 + Pf6N2E2_3695 0.79 +0.8
4,312,056 + Pf6N2E2_3695 0.79 -0.0
4,312,056 + Pf6N2E2_3695 0.79 -0.3
4,312,056 + Pf6N2E2_3695 0.79 -0.7
4,312,057 - Pf6N2E2_3695 0.80 +0.3
4,312,169 + +0.3
4,312,170 - -0.3
4,312,175 + -0.2
4,312,175 + -0.8
4,312,175 + +0.7
4,312,175 + -0.0
4,312,175 + -1.2
4,312,175 + -0.9
4,312,175 + +1.4
4,312,175 + -0.2
4,312,175 + -0.1
4,312,176 - +1.1
4,312,176 - +0.1
4,312,176 - +0.3
4,312,204 + -0.0
4,312,238 + +1.5
4,312,239 - +1.3
4,312,259 - -1.0
4,312,309 + -1.3
4,312,310 - -1.3
4,312,464 + Pf6N2E2_3696 0.59 -2.3
4,312,600 + +0.6
4,312,600 + +0.3
4,312,600 + -0.5
4,312,600 + +0.2
4,312,600 + +0.4
4,312,601 - +0.2
4,312,601 - -0.2
4,312,601 - -0.5
4,312,601 - +0.1
4,312,761 - +0.3
4,313,015 - Pf6N2E2_3697 0.35 +0.2
4,313,015 - Pf6N2E2_3697 0.35 -0.1
4,313,085 + Pf6N2E2_3697 0.43 -0.7
4,313,099 - Pf6N2E2_3697 0.45 -0.4
4,313,129 + Pf6N2E2_3697 0.48 +1.3
4,313,129 + Pf6N2E2_3697 0.48 -0.3
4,313,129 + Pf6N2E2_3697 0.48 +0.2
4,313,130 - Pf6N2E2_3697 0.48 -0.1
4,313,130 - Pf6N2E2_3697 0.48 +0.5

Or see this region's nucleotide sequence