Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_166

Experiment: Nickel (II) chloride 1.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_164 and Pf6N2E2_165 are separated by 23 nucleotidesPf6N2E2_165 and Pf6N2E2_166 overlap by 4 nucleotidesPf6N2E2_166 and Pf6N2E2_167 are separated by 30 nucleotides Pf6N2E2_164 - Ribose operon repressor, at 217,827 to 218,846 _164 Pf6N2E2_165 - Ribokinase (EC 2.7.1.15), at 218,870 to 219,784 _165 Pf6N2E2_166 - Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1), at 219,781 to 220,185 _166 Pf6N2E2_167 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 220,216 to 221,244 _167 Position (kb) 219 220 221Strain fitness (log2 ratio) -2 -1 0 1 2 3at 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.789 kb on + strandat 218.790 kb on - strandat 218.790 kb on - strandat 218.790 kb on - strandat 218.861 kb on + strandat 218.861 kb on + strandat 218.869 kb on + strandat 218.869 kb on + strandat 218.869 kb on + strandat 218.869 kb on + strandat 218.869 kb on + strandat 218.869 kb on + strandat 218.869 kb on + strandat 218.869 kb on + strandat 218.869 kb on + strandat 218.869 kb on + strandat 218.870 kb on - strandat 218.870 kb on - strandat 218.870 kb on - strandat 218.870 kb on - strandat 218.870 kb on - strandat 218.870 kb on - strandat 218.870 kb on - strandat 218.870 kb on - strandat 218.883 kb on + strandat 218.883 kb on + strandat 218.883 kb on + strandat 218.883 kb on + strandat 218.884 kb on - strandat 218.890 kb on - strandat 218.892 kb on + strandat 218.892 kb on + strandat 218.892 kb on + strandat 219.377 kb on - strand, within Pf6N2E2_165at 219.395 kb on + strand, within Pf6N2E2_165at 219.421 kb on + strand, within Pf6N2E2_165at 219.421 kb on + strand, within Pf6N2E2_165at 219.421 kb on + strand, within Pf6N2E2_165at 219.421 kb on + strand, within Pf6N2E2_165at 219.765 kb on + strandat 219.766 kb on - strandat 219.766 kb on - strandat 219.766 kb on - strandat 220.184 kb on - strandat 220.184 kb on - strandat 220.184 kb on - strandat 220.226 kb on - strandat 220.393 kb on - strand, within Pf6N2E2_167at 220.393 kb on - strand, within Pf6N2E2_167at 220.393 kb on - strand, within Pf6N2E2_167at 220.393 kb on - strand, within Pf6N2E2_167at 220.495 kb on + strand, within Pf6N2E2_167at 220.496 kb on - strand, within Pf6N2E2_167at 220.580 kb on + strand, within Pf6N2E2_167at 220.581 kb on - strand, within Pf6N2E2_167at 220.581 kb on - strand, within Pf6N2E2_167at 220.624 kb on + strand, within Pf6N2E2_167at 220.785 kb on + strand, within Pf6N2E2_167at 220.785 kb on + strand, within Pf6N2E2_167at 220.867 kb on + strand, within Pf6N2E2_167at 220.978 kb on + strand, within Pf6N2E2_167at 220.978 kb on + strand, within Pf6N2E2_167at 220.979 kb on - strand, within Pf6N2E2_167at 220.979 kb on - strand, within Pf6N2E2_167at 220.979 kb on - strand, within Pf6N2E2_167at 220.979 kb on - strand, within Pf6N2E2_167at 220.979 kb on - strand, within Pf6N2E2_167at 220.979 kb on - strand, within Pf6N2E2_167at 221.002 kb on + strand, within Pf6N2E2_167at 221.002 kb on + strand, within Pf6N2E2_167at 221.144 kb on - strandat 221.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM
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218,789 + +0.8
218,789 + +0.4
218,789 + +0.3
218,789 + -1.5
218,789 + -0.4
218,789 + +0.6
218,789 + -0.8
218,789 + -0.3
218,789 + -2.3
218,789 + +0.8
218,790 - +1.8
218,790 - +2.2
218,790 - +1.5
218,861 + -1.2
218,861 + +0.2
218,869 + +0.8
218,869 + -1.2
218,869 + +1.8
218,869 + +0.5
218,869 + +0.2
218,869 + +0.5
218,869 + -0.2
218,869 + +0.1
218,869 + +1.0
218,869 + -0.8
218,870 - +1.8
218,870 - +2.4
218,870 - +2.2
218,870 - +2.8
218,870 - +1.4
218,870 - +1.9
218,870 - +2.8
218,870 - +1.7
218,883 + +2.0
218,883 + +1.6
218,883 + +2.5
218,883 + +0.9
218,884 - +0.8
218,890 - +2.3
218,892 + +1.5
218,892 + +2.2
218,892 + +2.1
219,377 - Pf6N2E2_165 0.55 +3.0
219,395 + Pf6N2E2_165 0.57 +2.5
219,421 + Pf6N2E2_165 0.60 +2.3
219,421 + Pf6N2E2_165 0.60 +1.4
219,421 + Pf6N2E2_165 0.60 +1.9
219,421 + Pf6N2E2_165 0.60 +1.1
219,765 + -0.1
219,766 - +0.5
219,766 - +0.4
219,766 - -0.8
220,184 - +0.3
220,184 - +0.2
220,184 - +0.1
220,226 - -1.5
220,393 - Pf6N2E2_167 0.17 -0.3
220,393 - Pf6N2E2_167 0.17 +0.8
220,393 - Pf6N2E2_167 0.17 +0.8
220,393 - Pf6N2E2_167 0.17 +0.8
220,495 + Pf6N2E2_167 0.27 -0.3
220,496 - Pf6N2E2_167 0.27 +0.2
220,580 + Pf6N2E2_167 0.35 -0.8
220,581 - Pf6N2E2_167 0.35 -0.8
220,581 - Pf6N2E2_167 0.35 +1.6
220,624 + Pf6N2E2_167 0.40 -1.2
220,785 + Pf6N2E2_167 0.55 +1.2
220,785 + Pf6N2E2_167 0.55 -0.2
220,867 + Pf6N2E2_167 0.63 +0.2
220,978 + Pf6N2E2_167 0.74 -0.6
220,978 + Pf6N2E2_167 0.74 -0.8
220,979 - Pf6N2E2_167 0.74 +1.8
220,979 - Pf6N2E2_167 0.74 +1.8
220,979 - Pf6N2E2_167 0.74 +0.0
220,979 - Pf6N2E2_167 0.74 -0.8
220,979 - Pf6N2E2_167 0.74 -0.0
220,979 - Pf6N2E2_167 0.74 +0.3
221,002 + Pf6N2E2_167 0.76 -0.4
221,002 + Pf6N2E2_167 0.76 -0.0
221,144 - +1.3
221,144 - -0.8

Or see this region's nucleotide sequence