Experiment: Nickel (II) chloride 1.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1384 and Pf6N2E2_1385 are separated by 16 nucleotides Pf6N2E2_1385 and Pf6N2E2_1386 are separated by 10 nucleotides Pf6N2E2_1386 and Pf6N2E2_1387 are separated by 5 nucleotides
Pf6N2E2_1384 - SoxH protein, homolog, at 1,626,064 to 1,626,993
_1384
Pf6N2E2_1385 - FIG00956261: hypothetical protein, at 1,627,010 to 1,627,768
_1385
Pf6N2E2_1386 - amino acid ABC transporter, periplasmic substrate-binding protein, at 1,627,779 to 1,628,654
_1386
Pf6N2E2_1387 - Cytochrome C550 (Soluble cytochrome C), at 1,628,660 to 1,629,121
_1387
Position (kb)
1627
1628 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1626.141 kb on - strand at 1626.254 kb on + strand, within Pf6N2E2_1384 at 1626.404 kb on + strand, within Pf6N2E2_1384 at 1626.404 kb on + strand, within Pf6N2E2_1384 at 1626.404 kb on + strand, within Pf6N2E2_1384 at 1626.405 kb on - strand, within Pf6N2E2_1384 at 1626.405 kb on - strand, within Pf6N2E2_1384 at 1626.590 kb on + strand, within Pf6N2E2_1384 at 1626.591 kb on - strand, within Pf6N2E2_1384 at 1626.591 kb on - strand, within Pf6N2E2_1384 at 1626.689 kb on - strand, within Pf6N2E2_1384 at 1626.689 kb on - strand, within Pf6N2E2_1384 at 1626.689 kb on - strand, within Pf6N2E2_1384 at 1627.033 kb on + strand at 1627.033 kb on + strand at 1627.033 kb on + strand at 1627.034 kb on - strand at 1627.530 kb on - strand, within Pf6N2E2_1385 at 1627.663 kb on - strand, within Pf6N2E2_1385 at 1627.663 kb on - strand, within Pf6N2E2_1385 at 1627.780 kb on + strand at 1627.786 kb on + strand at 1627.786 kb on + strand at 1627.787 kb on - strand at 1627.787 kb on - strand at 1627.787 kb on - strand at 1627.826 kb on - strand at 1627.826 kb on - strand at 1627.882 kb on + strand, within Pf6N2E2_1386 at 1628.132 kb on - strand, within Pf6N2E2_1386 at 1628.132 kb on - strand, within Pf6N2E2_1386 at 1628.132 kb on - strand, within Pf6N2E2_1386 at 1628.221 kb on + strand, within Pf6N2E2_1386 at 1628.222 kb on - strand, within Pf6N2E2_1386 at 1628.249 kb on - strand, within Pf6N2E2_1386 at 1628.249 kb on - strand, within Pf6N2E2_1386 at 1628.386 kb on + strand, within Pf6N2E2_1386 at 1628.387 kb on - strand, within Pf6N2E2_1386 at 1628.387 kb on - strand, within Pf6N2E2_1386 at 1628.387 kb on - strand, within Pf6N2E2_1386 at 1628.387 kb on - strand, within Pf6N2E2_1386 at 1628.521 kb on + strand, within Pf6N2E2_1386 at 1628.572 kb on - strand at 1628.581 kb on + strand at 1628.582 kb on - strand at 1628.676 kb on - strand at 1628.724 kb on + strand, within Pf6N2E2_1387 at 1628.724 kb on + strand, within Pf6N2E2_1387 at 1628.724 kb on + strand, within Pf6N2E2_1387 at 1628.745 kb on + strand, within Pf6N2E2_1387 at 1628.745 kb on + strand, within Pf6N2E2_1387 at 1628.745 kb on + strand, within Pf6N2E2_1387 at 1628.746 kb on - strand, within Pf6N2E2_1387 at 1628.746 kb on - strand, within Pf6N2E2_1387 at 1628.746 kb on - strand, within Pf6N2E2_1387 at 1628.746 kb on - strand, within Pf6N2E2_1387
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 1.5 mM remove 1,626,141 - -0.0 1,626,254 + Pf6N2E2_1384 0.20 -0.2 1,626,404 + Pf6N2E2_1384 0.37 +2.7 1,626,404 + Pf6N2E2_1384 0.37 +2.9 1,626,404 + Pf6N2E2_1384 0.37 +0.3 1,626,405 - Pf6N2E2_1384 0.37 -0.6 1,626,405 - Pf6N2E2_1384 0.37 +1.0 1,626,590 + Pf6N2E2_1384 0.57 -0.7 1,626,591 - Pf6N2E2_1384 0.57 +2.4 1,626,591 - Pf6N2E2_1384 0.57 -0.6 1,626,689 - Pf6N2E2_1384 0.67 -1.4 1,626,689 - Pf6N2E2_1384 0.67 -0.0 1,626,689 - Pf6N2E2_1384 0.67 -0.7 1,627,033 + +0.0 1,627,033 + -0.0 1,627,033 + +0.4 1,627,034 - -0.1 1,627,530 - Pf6N2E2_1385 0.69 -0.0 1,627,663 - Pf6N2E2_1385 0.86 -1.6 1,627,663 - Pf6N2E2_1385 0.86 -0.2 1,627,780 + -0.2 1,627,786 + +0.6 1,627,786 + -1.0 1,627,787 - -0.6 1,627,787 - -1.4 1,627,787 - +0.8 1,627,826 - -0.2 1,627,826 - +0.2 1,627,882 + Pf6N2E2_1386 0.12 -1.2 1,628,132 - Pf6N2E2_1386 0.40 +2.2 1,628,132 - Pf6N2E2_1386 0.40 +0.3 1,628,132 - Pf6N2E2_1386 0.40 +0.2 1,628,221 + Pf6N2E2_1386 0.50 -1.0 1,628,222 - Pf6N2E2_1386 0.51 +2.9 1,628,249 - Pf6N2E2_1386 0.54 +0.3 1,628,249 - Pf6N2E2_1386 0.54 +0.6 1,628,386 + Pf6N2E2_1386 0.69 +0.8 1,628,387 - Pf6N2E2_1386 0.69 +0.2 1,628,387 - Pf6N2E2_1386 0.69 -0.4 1,628,387 - Pf6N2E2_1386 0.69 +0.3 1,628,387 - Pf6N2E2_1386 0.69 -1.4 1,628,521 + Pf6N2E2_1386 0.85 -0.0 1,628,572 - +0.3 1,628,581 + +0.9 1,628,582 - -0.4 1,628,676 - +0.1 1,628,724 + Pf6N2E2_1387 0.14 -3.0 1,628,724 + Pf6N2E2_1387 0.14 +1.2 1,628,724 + Pf6N2E2_1387 0.14 -0.4 1,628,745 + Pf6N2E2_1387 0.18 +0.8 1,628,745 + Pf6N2E2_1387 0.18 -1.4 1,628,745 + Pf6N2E2_1387 0.18 -0.2 1,628,746 - Pf6N2E2_1387 0.19 -0.4 1,628,746 - Pf6N2E2_1387 0.19 +0.6 1,628,746 - Pf6N2E2_1387 0.19 +0.6 1,628,746 - Pf6N2E2_1387 0.19 -0.2
Or see this region's nucleotide sequence