Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04080

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04075 and HSERO_RS04080 overlap by 20 nucleotidesHSERO_RS04080 and HSERO_RS04085 are separated by 228 nucleotides HSERO_RS04075: HSERO_RS04075 - type IV prepilin PilV protein, at 891,356 to 892,759 _RS04075 HSERO_RS04080: HSERO_RS04080 - invasion protein, at 892,740 to 893,237 _RS04080 HSERO_RS04085: HSERO_RS04085 - twitching motility protein PilT, at 893,466 to 894,563 _RS04085 Position (kb) 892 893 894Strain fitness (log2 ratio) -2 -1 0 1at 892.161 kb on + strand, within HSERO_RS04075at 892.169 kb on - strand, within HSERO_RS04075at 892.169 kb on - strand, within HSERO_RS04075at 892.245 kb on + strand, within HSERO_RS04075at 892.309 kb on - strand, within HSERO_RS04075at 892.438 kb on + strand, within HSERO_RS04075at 892.438 kb on + strand, within HSERO_RS04075at 892.446 kb on - strand, within HSERO_RS04075at 892.747 kb on + strandat 892.770 kb on - strandat 892.823 kb on + strand, within HSERO_RS04080at 892.857 kb on + strand, within HSERO_RS04080at 892.867 kb on + strand, within HSERO_RS04080at 892.910 kb on + strand, within HSERO_RS04080at 892.918 kb on - strand, within HSERO_RS04080at 892.954 kb on - strand, within HSERO_RS04080at 892.954 kb on - strand, within HSERO_RS04080at 892.954 kb on - strand, within HSERO_RS04080at 893.121 kb on + strand, within HSERO_RS04080at 893.161 kb on + strand, within HSERO_RS04080at 893.161 kb on + strand, within HSERO_RS04080at 893.169 kb on - strand, within HSERO_RS04080at 893.169 kb on - strand, within HSERO_RS04080at 893.242 kb on - strandat 893.392 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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892,161 + HSERO_RS04075 0.57 +0.0
892,169 - HSERO_RS04075 0.58 -1.2
892,169 - HSERO_RS04075 0.58 +0.7
892,245 + HSERO_RS04075 0.63 -0.3
892,309 - HSERO_RS04075 0.68 +1.2
892,438 + HSERO_RS04075 0.77 +0.3
892,438 + HSERO_RS04075 0.77 -2.4
892,446 - HSERO_RS04075 0.78 +0.2
892,747 + -0.8
892,770 - +1.2
892,823 + HSERO_RS04080 0.17 +0.8
892,857 + HSERO_RS04080 0.23 -0.7
892,867 + HSERO_RS04080 0.26 +1.0
892,910 + HSERO_RS04080 0.34 +0.3
892,918 - HSERO_RS04080 0.36 +0.9
892,954 - HSERO_RS04080 0.43 +0.4
892,954 - HSERO_RS04080 0.43 -0.2
892,954 - HSERO_RS04080 0.43 +0.1
893,121 + HSERO_RS04080 0.77 +1.4
893,161 + HSERO_RS04080 0.85 +0.2
893,161 + HSERO_RS04080 0.85 -0.5
893,169 - HSERO_RS04080 0.86 -1.1
893,169 - HSERO_RS04080 0.86 +1.2
893,242 - +0.8
893,392 + +0.8

Or see this region's nucleotide sequence