Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22955 and HSERO_RS22960 are separated by 122 nucleotides HSERO_RS22960 and HSERO_RS22965 are separated by 125 nucleotides HSERO_RS22965 and HSERO_RS22970 are separated by 15 nucleotides
HSERO_RS22955: HSERO_RS22955 - D-amino acid dehydrogenase, at 5,267,393 to 5,268,679
_RS22955
HSERO_RS22960: HSERO_RS22960 - glyoxalase, at 5,268,802 to 5,269,188
_RS22960
HSERO_RS22965: HSERO_RS22965 - activator of HSP90 ATPase, at 5,269,314 to 5,269,769
_RS22965
HSERO_RS22970: HSERO_RS22970 - membrane protein, at 5,269,785 to 5,271,455
_RS22970
Position (kb) 5269
5270 Strain fitness (log2 ratio) -2
-1
0
1 at 5268.632 kb on + strand at 5268.759 kb on - strand at 5268.791 kb on - strand at 5269.057 kb on + strand, within HSERO_RS22960 at 5269.186 kb on - strand at 5269.319 kb on - strand at 5269.319 kb on - strand at 5269.319 kb on - strand at 5269.330 kb on - strand at 5269.355 kb on - strand at 5269.559 kb on + strand, within HSERO_RS22965 at 5269.780 kb on - strand at 5269.810 kb on + strand at 5269.942 kb on - strand at 5269.969 kb on - strand, within HSERO_RS22970 at 5270.006 kb on - strand, within HSERO_RS22970 at 5270.055 kb on + strand, within HSERO_RS22970 at 5270.314 kb on - strand, within HSERO_RS22970 at 5270.648 kb on + strand, within HSERO_RS22970 at 5270.682 kb on + strand, within HSERO_RS22970 at 5270.703 kb on - strand, within HSERO_RS22970
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 5,268,632 + -0.5 5,268,759 - +0.8 5,268,791 - +0.9 5,269,057 + HSERO_RS22960 0.66 +0.2 5,269,186 - +1.0 5,269,319 - +1.4 5,269,319 - -0.4 5,269,319 - -0.5 5,269,330 - -0.3 5,269,355 - -0.0 5,269,559 + HSERO_RS22965 0.54 +0.8 5,269,780 - -1.3 5,269,810 + -2.1 5,269,942 - -0.3 5,269,969 - HSERO_RS22970 0.11 -0.2 5,270,006 - HSERO_RS22970 0.13 -1.2 5,270,055 + HSERO_RS22970 0.16 +0.7 5,270,314 - HSERO_RS22970 0.32 -0.7 5,270,648 + HSERO_RS22970 0.52 -0.2 5,270,682 + HSERO_RS22970 0.54 +0.5 5,270,703 - HSERO_RS22970 0.55 -0.6
Or see this region's nucleotide sequence