Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18510

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS18505 and HSERO_RS18510 overlap by 8 nucleotidesHSERO_RS18510 and HSERO_RS18515 overlap by 4 nucleotidesHSERO_RS18515 and HSERO_RS18520 overlap by 8 nucleotides HSERO_RS18505: HSERO_RS18505 - histidine ammonia-lyase, at 4,246,369 to 4,247,949 _RS18505 HSERO_RS18510: HSERO_RS18510 - thioesterase, at 4,247,942 to 4,248,406 _RS18510 HSERO_RS18515: HSERO_RS18515 - membrane protein, at 4,248,403 to 4,249,014 _RS18515 HSERO_RS18520: HSERO_RS18520 - exporter, at 4,249,007 to 4,251,439 _RS18520 Position (kb) 4247 4248 4249Strain fitness (log2 ratio) -2 -1 0 1at 4247.019 kb on + strand, within HSERO_RS18505at 4247.485 kb on + strand, within HSERO_RS18505at 4247.560 kb on - strand, within HSERO_RS18505at 4247.590 kb on + strand, within HSERO_RS18505at 4247.597 kb on + strand, within HSERO_RS18505at 4247.663 kb on - strand, within HSERO_RS18505at 4247.675 kb on + strand, within HSERO_RS18505at 4247.721 kb on + strand, within HSERO_RS18505at 4247.756 kb on + strand, within HSERO_RS18505at 4247.855 kb on - strandat 4247.928 kb on + strandat 4247.983 kb on - strandat 4248.024 kb on - strand, within HSERO_RS18510at 4248.129 kb on + strand, within HSERO_RS18510at 4248.165 kb on + strand, within HSERO_RS18510at 4248.508 kb on + strand, within HSERO_RS18515at 4248.738 kb on - strand, within HSERO_RS18515at 4249.057 kb on + strandat 4249.115 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,247,019 + HSERO_RS18505 0.41 -0.2
4,247,485 + HSERO_RS18505 0.71 -2.0
4,247,560 - HSERO_RS18505 0.75 -1.0
4,247,590 + HSERO_RS18505 0.77 +0.6
4,247,597 + HSERO_RS18505 0.78 -2.0
4,247,663 - HSERO_RS18505 0.82 -0.3
4,247,675 + HSERO_RS18505 0.83 +0.1
4,247,721 + HSERO_RS18505 0.86 -0.6
4,247,756 + HSERO_RS18505 0.88 +0.8
4,247,855 - -0.7
4,247,928 + +0.9
4,247,983 - +0.7
4,248,024 - HSERO_RS18510 0.18 +1.1
4,248,129 + HSERO_RS18510 0.40 +0.2
4,248,165 + HSERO_RS18510 0.48 +0.1
4,248,508 + HSERO_RS18515 0.17 -1.2
4,248,738 - HSERO_RS18515 0.55 -0.3
4,249,057 + -0.0
4,249,115 - -1.4

Or see this region's nucleotide sequence