Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01335

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01330 and HSERO_RS01335 are separated by 60 nucleotidesHSERO_RS01335 and HSERO_RS01340 are separated by 26 nucleotides HSERO_RS01330: HSERO_RS01330 - RND transporter, at 284,477 to 285,958 _RS01330 HSERO_RS01335: HSERO_RS01335 - sugar ABC transporter permease, at 286,019 to 286,870 _RS01335 HSERO_RS01340: HSERO_RS01340 - sugar ABC transporter permease, at 286,897 to 287,832 _RS01340 Position (kb) 286 287Strain fitness (log2 ratio) -2 -1 0 1 2 3at 285.880 kb on + strandat 285.880 kb on + strandat 285.901 kb on - strandat 285.971 kb on + strandat 286.076 kb on + strandat 286.084 kb on - strandat 286.177 kb on - strand, within HSERO_RS01335at 286.363 kb on - strand, within HSERO_RS01335at 286.448 kb on - strand, within HSERO_RS01335at 286.537 kb on + strand, within HSERO_RS01335at 286.560 kb on - strand, within HSERO_RS01335at 286.664 kb on + strand, within HSERO_RS01335at 286.721 kb on - strand, within HSERO_RS01335at 286.914 kb on + strandat 287.013 kb on + strand, within HSERO_RS01340at 287.021 kb on - strand, within HSERO_RS01340at 287.021 kb on - strand, within HSERO_RS01340at 287.029 kb on + strand, within HSERO_RS01340at 287.182 kb on - strand, within HSERO_RS01340at 287.212 kb on - strand, within HSERO_RS01340at 287.491 kb on + strand, within HSERO_RS01340at 287.505 kb on - strand, within HSERO_RS01340at 287.506 kb on - strand, within HSERO_RS01340at 287.675 kb on + strandat 287.746 kb on + strandat 287.748 kb on + strandat 287.754 kb on - strandat 287.781 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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285,880 + -0.5
285,880 + -1.0
285,901 - -0.2
285,971 + +3.7
286,076 + -0.2
286,084 - +0.4
286,177 - HSERO_RS01335 0.19 +0.0
286,363 - HSERO_RS01335 0.40 -0.8
286,448 - HSERO_RS01335 0.50 -0.2
286,537 + HSERO_RS01335 0.61 -0.1
286,560 - HSERO_RS01335 0.63 -0.7
286,664 + HSERO_RS01335 0.76 -0.8
286,721 - HSERO_RS01335 0.82 +0.3
286,914 + -0.3
287,013 + HSERO_RS01340 0.12 -0.0
287,021 - HSERO_RS01340 0.13 -0.0
287,021 - HSERO_RS01340 0.13 +0.5
287,029 + HSERO_RS01340 0.14 -0.1
287,182 - HSERO_RS01340 0.30 +1.2
287,212 - HSERO_RS01340 0.34 -0.9
287,491 + HSERO_RS01340 0.63 +0.6
287,505 - HSERO_RS01340 0.65 -0.1
287,506 - HSERO_RS01340 0.65 +0.3
287,675 + -1.5
287,746 + -0.5
287,748 + -2.6
287,754 - +0.2
287,781 - -0.3

Or see this region's nucleotide sequence