Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23210 and BWI76_RS23215 are separated by 17 nucleotides BWI76_RS23215 and BWI76_RS23220 are separated by 227 nucleotides
BWI76_RS23210: BWI76_RS23210 - threonine-phosphate decarboxylase, at 4,834,503 to 4,835,582
_RS23210
BWI76_RS23215: BWI76_RS23215 - N-acetylmuramoyl-L-alanine amidase, at 4,835,600 to 4,836,853
_RS23215
BWI76_RS23220: BWI76_RS23220 - amino-acid N-acetyltransferase, at 4,837,081 to 4,838,412
_RS23220
Position (kb) 4835
4836
4837 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4834.697 kb on + strand, within BWI76_RS23210 at 4834.701 kb on + strand, within BWI76_RS23210 at 4835.216 kb on + strand, within BWI76_RS23210 at 4835.408 kb on + strand, within BWI76_RS23210 at 4835.566 kb on + strand at 4835.602 kb on + strand at 4835.665 kb on - strand at 4835.717 kb on - strand at 4835.733 kb on + strand, within BWI76_RS23215 at 4835.954 kb on + strand, within BWI76_RS23215 at 4835.969 kb on - strand, within BWI76_RS23215 at 4836.066 kb on + strand, within BWI76_RS23215 at 4836.246 kb on + strand, within BWI76_RS23215 at 4836.329 kb on + strand, within BWI76_RS23215 at 4836.364 kb on - strand, within BWI76_RS23215 at 4836.448 kb on + strand, within BWI76_RS23215 at 4836.448 kb on + strand, within BWI76_RS23215 at 4836.499 kb on + strand, within BWI76_RS23215 at 4836.903 kb on + strand at 4836.923 kb on + strand at 4837.004 kb on + strand at 4837.458 kb on - strand, within BWI76_RS23220 at 4837.462 kb on - strand, within BWI76_RS23220 at 4837.491 kb on + strand, within BWI76_RS23220 at 4837.491 kb on + strand, within BWI76_RS23220 at 4837.499 kb on - strand, within BWI76_RS23220 at 4837.499 kb on - strand, within BWI76_RS23220 at 4837.631 kb on + strand, within BWI76_RS23220 at 4837.644 kb on - strand, within BWI76_RS23220
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL remove 4,834,697 + BWI76_RS23210 0.18 -0.8 4,834,701 + BWI76_RS23210 0.18 +0.2 4,835,216 + BWI76_RS23210 0.66 -0.2 4,835,408 + BWI76_RS23210 0.84 +0.2 4,835,566 + -0.8 4,835,602 + -1.2 4,835,665 - +1.0 4,835,717 - +1.5 4,835,733 + BWI76_RS23215 0.11 +1.0 4,835,954 + BWI76_RS23215 0.28 -0.6 4,835,969 - BWI76_RS23215 0.29 +0.8 4,836,066 + BWI76_RS23215 0.37 +1.1 4,836,246 + BWI76_RS23215 0.52 +1.0 4,836,329 + BWI76_RS23215 0.58 +1.6 4,836,364 - BWI76_RS23215 0.61 +0.3 4,836,448 + BWI76_RS23215 0.68 +0.6 4,836,448 + BWI76_RS23215 0.68 +3.3 4,836,499 + BWI76_RS23215 0.72 +0.7 4,836,903 + +0.8 4,836,923 + +0.3 4,837,004 + -1.8 4,837,458 - BWI76_RS23220 0.28 +1.4 4,837,462 - BWI76_RS23220 0.29 +0.4 4,837,491 + BWI76_RS23220 0.31 +0.2 4,837,491 + BWI76_RS23220 0.31 +0.5 4,837,499 - BWI76_RS23220 0.31 +0.4 4,837,499 - BWI76_RS23220 0.31 +0.1 4,837,631 + BWI76_RS23220 0.41 -0.7 4,837,644 - BWI76_RS23220 0.42 +0.4
Or see this region's nucleotide sequence