Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12380
Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^4 spores/mL |
|---|---|---|---|---|---|
| remove | |||||
| 2,585,536 | + | BWI76_RS12375 | 0.23 | -0.2 | |
| 2,585,614 | - | BWI76_RS12375 | 0.38 | +0.2 | |
| 2,585,644 | - | BWI76_RS12375 | 0.43 | -1.9 | |
| 2,585,800 | + | BWI76_RS12375 | 0.71 | -1.0 | |
| 2,586,058 | - | +0.3 | |||
| 2,586,071 | + | +2.5 | |||
| 2,586,188 | - | -1.7 | |||
| 2,586,460 | - | +0.5 | |||
| 2,586,478 | + | -1.4 | |||
| 2,586,505 | + | BWI76_RS12380 | 0.14 | -0.7 | |
| 2,586,547 | - | BWI76_RS12380 | 0.24 | -0.8 | |
| 2,586,570 | - | BWI76_RS12380 | 0.29 | -2.7 | |
| 2,586,582 | + | BWI76_RS12380 | 0.32 | -2.7 | |
| 2,586,687 | + | BWI76_RS12380 | 0.57 | -0.9 | |
| 2,586,758 | + | BWI76_RS12380 | 0.74 | -2.0 | |
| 2,586,764 | + | BWI76_RS12380 | 0.75 | -1.0 | |
| 2,586,825 | - | -1.2 | |||
| 2,586,827 | + | -1.1 | |||
| 2,587,122 | - | BWI76_RS12385 | 0.20 | -1.4 | |
| 2,587,243 | + | BWI76_RS12385 | 0.30 | -0.9 | |
| 2,587,287 | + | BWI76_RS12385 | 0.33 | -0.1 | |
| 2,587,321 | + | BWI76_RS12385 | 0.36 | -1.0 | |
| 2,587,367 | + | BWI76_RS12385 | 0.39 | +2.1 | |
| 2,587,471 | + | BWI76_RS12385 | 0.48 | -3.0 | |
| 2,587,548 | - | BWI76_RS12385 | 0.54 | +0.4 | |
| 2,587,560 | + | BWI76_RS12385 | 0.55 | -2.2 | |
| 2,587,568 | - | -1.4 | |||
| 2,587,810 | + | BWI76_RS12385 | 0.74 | -1.1 |
Or see this region's nucleotide sequence