Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24400 and BWI76_RS24405 are separated by 169 nucleotides BWI76_RS24405 and BWI76_RS24410 are separated by 5 nucleotides
BWI76_RS24400: BWI76_RS24400 - outer membrane channel protein TolC, at 5,085,527 to 5,086,975
_RS24400
BWI76_RS24405: BWI76_RS24405 - hypothetical protein, at 5,087,145 to 5,087,813
_RS24405
BWI76_RS24410: BWI76_RS24410 - putative glutathione-like synthetase, at 5,087,819 to 5,088,979
_RS24410
Position (kb) 5087
5088 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5086.236 kb on - strand, within BWI76_RS24400 at 5086.322 kb on - strand, within BWI76_RS24400 at 5086.391 kb on - strand, within BWI76_RS24400 at 5086.435 kb on - strand, within BWI76_RS24400 at 5086.527 kb on - strand, within BWI76_RS24400 at 5086.532 kb on + strand, within BWI76_RS24400 at 5086.542 kb on - strand, within BWI76_RS24400 at 5086.563 kb on + strand, within BWI76_RS24400 at 5086.633 kb on - strand, within BWI76_RS24400 at 5086.719 kb on - strand, within BWI76_RS24400 at 5086.719 kb on - strand, within BWI76_RS24400 at 5086.719 kb on - strand, within BWI76_RS24400 at 5086.961 kb on - strand at 5087.005 kb on + strand at 5087.037 kb on - strand at 5087.037 kb on - strand at 5087.092 kb on + strand at 5087.095 kb on - strand at 5087.100 kb on - strand at 5087.323 kb on + strand, within BWI76_RS24405 at 5087.343 kb on + strand, within BWI76_RS24405 at 5087.343 kb on + strand, within BWI76_RS24405 at 5087.351 kb on - strand, within BWI76_RS24405 at 5087.405 kb on - strand, within BWI76_RS24405 at 5087.579 kb on - strand, within BWI76_RS24405 at 5087.644 kb on + strand, within BWI76_RS24405 at 5087.649 kb on + strand, within BWI76_RS24405 at 5087.711 kb on - strand, within BWI76_RS24405 at 5087.768 kb on - strand at 5087.973 kb on + strand, within BWI76_RS24410 at 5087.973 kb on + strand, within BWI76_RS24410 at 5088.138 kb on + strand, within BWI76_RS24410 at 5088.405 kb on - strand, within BWI76_RS24410 at 5088.555 kb on - strand, within BWI76_RS24410 at 5088.642 kb on - strand, within BWI76_RS24410 at 5088.728 kb on + strand, within BWI76_RS24410
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 5,086,236 - BWI76_RS24400 0.49 -0.6 5,086,322 - BWI76_RS24400 0.55 +0.9 5,086,391 - BWI76_RS24400 0.60 +0.9 5,086,435 - BWI76_RS24400 0.63 -1.1 5,086,527 - BWI76_RS24400 0.69 -1.9 5,086,532 + BWI76_RS24400 0.69 -2.8 5,086,542 - BWI76_RS24400 0.70 +0.9 5,086,563 + BWI76_RS24400 0.71 -1.4 5,086,633 - BWI76_RS24400 0.76 +0.9 5,086,719 - BWI76_RS24400 0.82 +0.9 5,086,719 - BWI76_RS24400 0.82 +0.9 5,086,719 - BWI76_RS24400 0.82 -0.6 5,086,961 - +0.9 5,087,005 + +0.9 5,087,037 - +0.2 5,087,037 - +0.1 5,087,092 + +0.8 5,087,095 - -2.9 5,087,100 - +0.9 5,087,323 + BWI76_RS24405 0.27 -1.6 5,087,343 + BWI76_RS24405 0.30 -0.8 5,087,343 + BWI76_RS24405 0.30 -3.5 5,087,351 - BWI76_RS24405 0.31 +0.9 5,087,405 - BWI76_RS24405 0.39 -1.1 5,087,579 - BWI76_RS24405 0.65 +0.5 5,087,644 + BWI76_RS24405 0.75 -0.7 5,087,649 + BWI76_RS24405 0.75 -0.1 5,087,711 - BWI76_RS24405 0.85 -1.8 5,087,768 - -0.0 5,087,973 + BWI76_RS24410 0.13 +0.5 5,087,973 + BWI76_RS24410 0.13 -1.0 5,088,138 + BWI76_RS24410 0.27 -0.3 5,088,405 - BWI76_RS24410 0.50 -0.6 5,088,555 - BWI76_RS24410 0.63 +0.0 5,088,642 - BWI76_RS24410 0.71 -1.4 5,088,728 + BWI76_RS24410 0.78 +0.9
Or see this region's nucleotide sequence