Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17170 and BWI76_RS17175 are separated by 289 nucleotides BWI76_RS17175 and BWI76_RS17180 are separated by 92 nucleotides BWI76_RS17180 and BWI76_RS17185 are separated by 106 nucleotides
BWI76_RS17170: BWI76_RS17170 - membrane protein, at 3,558,961 to 3,559,719
_RS17170
BWI76_RS17175: BWI76_RS17175 - 6-phosphofructokinase II, at 3,560,009 to 3,560,941
_RS17175
BWI76_RS17180: BWI76_RS17180 - hypothetical protein, at 3,561,034 to 3,561,318
_RS17180
BWI76_RS17185: BWI76_RS17185 - fructosamine kinase family protein, at 3,561,425 to 3,562,297
_RS17185
Position (kb)
3560
3561 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3559.013 kb on - strand at 3559.016 kb on + strand at 3559.031 kb on + strand at 3559.034 kb on - strand at 3559.044 kb on + strand, within BWI76_RS17170 at 3559.053 kb on - strand, within BWI76_RS17170 at 3559.055 kb on + strand, within BWI76_RS17170 at 3559.087 kb on + strand, within BWI76_RS17170 at 3559.087 kb on + strand, within BWI76_RS17170 at 3559.087 kb on + strand, within BWI76_RS17170 at 3559.105 kb on - strand, within BWI76_RS17170 at 3559.105 kb on - strand, within BWI76_RS17170 at 3559.146 kb on + strand, within BWI76_RS17170 at 3559.248 kb on + strand, within BWI76_RS17170 at 3559.278 kb on + strand, within BWI76_RS17170 at 3559.311 kb on - strand, within BWI76_RS17170 at 3559.348 kb on - strand, within BWI76_RS17170 at 3559.398 kb on + strand, within BWI76_RS17170 at 3559.514 kb on + strand, within BWI76_RS17170 at 3559.615 kb on - strand, within BWI76_RS17170 at 3559.626 kb on - strand, within BWI76_RS17170 at 3559.750 kb on + strand at 3559.753 kb on - strand at 3559.770 kb on - strand at 3559.852 kb on - strand at 3559.874 kb on + strand at 3560.031 kb on + strand at 3560.039 kb on - strand at 3560.041 kb on + strand at 3560.140 kb on + strand, within BWI76_RS17175 at 3560.934 kb on + strand at 3561.067 kb on + strand, within BWI76_RS17180 at 3561.144 kb on - strand, within BWI76_RS17180 at 3561.261 kb on + strand, within BWI76_RS17180 at 3561.767 kb on + strand, within BWI76_RS17185
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 3,559,013 - +0.8 3,559,016 + +0.1 3,559,031 + +0.7 3,559,034 - +0.2 3,559,044 + BWI76_RS17170 0.11 +0.2 3,559,053 - BWI76_RS17170 0.12 +1.9 3,559,055 + BWI76_RS17170 0.12 -2.1 3,559,087 + BWI76_RS17170 0.17 -0.7 3,559,087 + BWI76_RS17170 0.17 -0.7 3,559,087 + BWI76_RS17170 0.17 -1.0 3,559,105 - BWI76_RS17170 0.19 +0.4 3,559,105 - BWI76_RS17170 0.19 -1.5 3,559,146 + BWI76_RS17170 0.24 +0.1 3,559,248 + BWI76_RS17170 0.38 -0.9 3,559,278 + BWI76_RS17170 0.42 -0.0 3,559,311 - BWI76_RS17170 0.46 +0.4 3,559,348 - BWI76_RS17170 0.51 -0.2 3,559,398 + BWI76_RS17170 0.58 -1.0 3,559,514 + BWI76_RS17170 0.73 -0.6 3,559,615 - BWI76_RS17170 0.86 -2.0 3,559,626 - BWI76_RS17170 0.88 +0.8 3,559,750 + -1.5 3,559,753 - +0.6 3,559,770 - +0.7 3,559,852 - -0.0 3,559,874 + -0.0 3,560,031 + -0.2 3,560,039 - +0.3 3,560,041 + -0.7 3,560,140 + BWI76_RS17175 0.14 -1.0 3,560,934 + -0.2 3,561,067 + BWI76_RS17180 0.12 +0.6 3,561,144 - BWI76_RS17180 0.39 -2.2 3,561,261 + BWI76_RS17180 0.80 +1.7 3,561,767 + BWI76_RS17185 0.39 +0.1
Or see this region's nucleotide sequence