Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15145 and BWI76_RS15150 overlap by 1 nucleotides BWI76_RS15150 and BWI76_RS15155 are separated by 13 nucleotides BWI76_RS15155 and BWI76_RS15160 are separated by 72 nucleotides
BWI76_RS15145: BWI76_RS15145 - efflux transporter periplasmic adaptor subunit, at 3,175,375 to 3,176,844
_RS15145
BWI76_RS15150: BWI76_RS15150 - outer membrane efflux protein, at 3,176,844 to 3,178,091
_RS15150
BWI76_RS15155: BWI76_RS15155 - hypothetical protein, at 3,178,105 to 3,178,473
_RS15155
BWI76_RS15160: BWI76_RS15160 - hypothetical protein, at 3,178,546 to 3,178,965
_RS15160
Position (kb)
3176
3177
3178
3179 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3176.300 kb on + strand, within BWI76_RS15145 at 3176.374 kb on - strand, within BWI76_RS15145 at 3176.588 kb on + strand, within BWI76_RS15145 at 3176.656 kb on + strand, within BWI76_RS15145 at 3176.712 kb on - strand at 3177.188 kb on - strand, within BWI76_RS15150 at 3177.270 kb on - strand, within BWI76_RS15150 at 3177.314 kb on - strand, within BWI76_RS15150 at 3177.349 kb on + strand, within BWI76_RS15150 at 3177.979 kb on + strand at 3178.003 kb on + strand at 3178.097 kb on + strand at 3178.135 kb on + strand at 3178.135 kb on + strand at 3178.143 kb on - strand, within BWI76_RS15155 at 3178.205 kb on - strand, within BWI76_RS15155 at 3178.216 kb on + strand, within BWI76_RS15155 at 3178.217 kb on - strand, within BWI76_RS15155 at 3178.217 kb on - strand, within BWI76_RS15155 at 3178.224 kb on - strand, within BWI76_RS15155 at 3178.227 kb on + strand, within BWI76_RS15155 at 3178.232 kb on + strand, within BWI76_RS15155 at 3178.235 kb on - strand, within BWI76_RS15155 at 3178.235 kb on - strand, within BWI76_RS15155 at 3178.245 kb on - strand, within BWI76_RS15155 at 3178.246 kb on + strand, within BWI76_RS15155 at 3178.277 kb on - strand, within BWI76_RS15155 at 3178.378 kb on - strand, within BWI76_RS15155 at 3178.378 kb on - strand, within BWI76_RS15155 at 3178.422 kb on + strand, within BWI76_RS15155 at 3178.429 kb on + strand, within BWI76_RS15155 at 3178.437 kb on - strand at 3178.504 kb on + strand at 3178.514 kb on + strand at 3178.514 kb on + strand at 3178.514 kb on + strand at 3178.519 kb on + strand at 3178.519 kb on + strand at 3178.519 kb on + strand at 3178.522 kb on - strand at 3178.522 kb on - strand at 3178.539 kb on - strand at 3178.574 kb on - strand at 3178.607 kb on - strand, within BWI76_RS15160 at 3178.607 kb on - strand, within BWI76_RS15160 at 3178.609 kb on + strand, within BWI76_RS15160 at 3178.609 kb on + strand, within BWI76_RS15160 at 3178.609 kb on + strand, within BWI76_RS15160 at 3178.617 kb on + strand, within BWI76_RS15160 at 3178.617 kb on - strand, within BWI76_RS15160 at 3178.617 kb on - strand, within BWI76_RS15160 at 3178.617 kb on - strand, within BWI76_RS15160 at 3178.627 kb on + strand, within BWI76_RS15160 at 3178.669 kb on - strand, within BWI76_RS15160 at 3178.684 kb on - strand, within BWI76_RS15160 at 3178.691 kb on - strand, within BWI76_RS15160 at 3178.691 kb on - strand, within BWI76_RS15160 at 3178.694 kb on - strand, within BWI76_RS15160 at 3178.723 kb on - strand, within BWI76_RS15160 at 3178.805 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.863 kb on + strand, within BWI76_RS15160 at 3178.868 kb on + strand at 3178.871 kb on - strand, within BWI76_RS15160 at 3178.871 kb on - strand, within BWI76_RS15160 at 3178.871 kb on - strand, within BWI76_RS15160 at 3178.871 kb on - strand, within BWI76_RS15160 at 3178.871 kb on - strand at 3178.871 kb on - strand, within BWI76_RS15160 at 3178.871 kb on - strand, within BWI76_RS15160 at 3178.876 kb on - strand, within BWI76_RS15160 at 3178.878 kb on + strand, within BWI76_RS15160 at 3178.886 kb on - strand at 3178.894 kb on + strand, within BWI76_RS15160 at 3178.894 kb on + strand, within BWI76_RS15160 at 3178.950 kb on + strand at 3178.969 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 3,176,300 + BWI76_RS15145 0.63 +0.2 3,176,374 - BWI76_RS15145 0.68 +0.4 3,176,588 + BWI76_RS15145 0.83 +1.2 3,176,656 + BWI76_RS15145 0.87 -1.3 3,176,712 - -0.1 3,177,188 - BWI76_RS15150 0.28 -0.4 3,177,270 - BWI76_RS15150 0.34 -1.5 3,177,314 - BWI76_RS15150 0.38 -0.3 3,177,349 + BWI76_RS15150 0.40 -1.2 3,177,979 + +1.2 3,178,003 + +0.5 3,178,097 + -0.1 3,178,135 + +0.3 3,178,135 + -2.8 3,178,143 - BWI76_RS15155 0.10 +0.1 3,178,205 - BWI76_RS15155 0.27 -1.1 3,178,216 + BWI76_RS15155 0.30 +0.6 3,178,217 - BWI76_RS15155 0.30 +0.1 3,178,217 - BWI76_RS15155 0.30 -0.1 3,178,224 - BWI76_RS15155 0.32 +0.6 3,178,227 + BWI76_RS15155 0.33 -1.0 3,178,232 + BWI76_RS15155 0.34 -1.2 3,178,235 - BWI76_RS15155 0.35 +0.2 3,178,235 - BWI76_RS15155 0.35 +1.3 3,178,245 - BWI76_RS15155 0.38 +0.3 3,178,246 + BWI76_RS15155 0.38 +0.3 3,178,277 - BWI76_RS15155 0.47 +0.4 3,178,378 - BWI76_RS15155 0.74 -0.0 3,178,378 - BWI76_RS15155 0.74 -1.0 3,178,422 + BWI76_RS15155 0.86 -0.1 3,178,429 + BWI76_RS15155 0.88 +0.2 3,178,437 - +0.4 3,178,504 + +1.1 3,178,514 + -0.8 3,178,514 + -0.9 3,178,514 + +0.2 3,178,519 + +0.6 3,178,519 + +0.2 3,178,519 + +0.2 3,178,522 - +1.7 3,178,522 - +0.4 3,178,539 - -1.0 3,178,574 - +0.9 3,178,607 - BWI76_RS15160 0.15 -2.3 3,178,607 - BWI76_RS15160 0.15 -2.2 3,178,609 + BWI76_RS15160 0.15 -1.1 3,178,609 + BWI76_RS15160 0.15 -0.8 3,178,609 + BWI76_RS15160 0.15 +1.0 3,178,617 + BWI76_RS15160 0.17 +2.0 3,178,617 - BWI76_RS15160 0.17 +0.4 3,178,617 - BWI76_RS15160 0.17 -1.8 3,178,617 - BWI76_RS15160 0.17 +0.3 3,178,627 + BWI76_RS15160 0.19 -0.1 3,178,669 - BWI76_RS15160 0.29 +0.5 3,178,684 - BWI76_RS15160 0.33 -0.1 3,178,691 - BWI76_RS15160 0.35 -1.1 3,178,691 - BWI76_RS15160 0.35 -0.4 3,178,694 - BWI76_RS15160 0.35 +0.1 3,178,723 - BWI76_RS15160 0.42 -0.3 3,178,805 + BWI76_RS15160 0.62 +0.5 3,178,863 + BWI76_RS15160 0.75 +0.2 3,178,863 + BWI76_RS15160 0.75 +1.8 3,178,863 + BWI76_RS15160 0.75 -0.9 3,178,863 + BWI76_RS15160 0.75 -0.5 3,178,863 + BWI76_RS15160 0.75 +0.7 3,178,863 + BWI76_RS15160 0.75 +0.4 3,178,863 + BWI76_RS15160 0.75 +1.1 3,178,863 + BWI76_RS15160 0.75 +0.2 3,178,868 + +0.2 3,178,871 - BWI76_RS15160 0.77 -0.6 3,178,871 - BWI76_RS15160 0.77 -0.4 3,178,871 - BWI76_RS15160 0.77 +1.2 3,178,871 - BWI76_RS15160 0.77 -0.9 3,178,871 - +0.2 3,178,871 - BWI76_RS15160 0.77 -2.4 3,178,871 - BWI76_RS15160 0.77 -0.5 3,178,876 - BWI76_RS15160 0.79 +2.8 3,178,878 + BWI76_RS15160 0.79 +0.7 3,178,886 - -0.8 3,178,894 + BWI76_RS15160 0.83 +0.1 3,178,894 + BWI76_RS15160 0.83 +0.4 3,178,950 + -2.1 3,178,969 - -1.6
Or see this region's nucleotide sequence