Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13765

Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13750 and BWI76_RS13755 are separated by 41 nucleotidesBWI76_RS13755 and BWI76_RS13760 overlap by 1 nucleotidesBWI76_RS13760 and BWI76_RS13765 are separated by 356 nucleotidesBWI76_RS13765 and BWI76_RS13770 are separated by 5 nucleotides BWI76_RS13750: BWI76_RS13750 - formate dehydrogenase, at 2,868,274 to 2,868,930 _RS13750 BWI76_RS13755: BWI76_RS13755 - hypothetical protein, at 2,868,972 to 2,869,295 _RS13755 BWI76_RS13760: BWI76_RS13760 - hypothetical protein, at 2,869,295 to 2,869,483 _RS13760 BWI76_RS13765: BWI76_RS13765 - MFS transporter AraJ, at 2,869,840 to 2,870,991 _RS13765 BWI76_RS13770: BWI76_RS13770 - alkylhydroperoxidase domain protein, at 2,870,997 to 2,872,088 _RS13770 Position (kb) 2869 2870 2871Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2868.865 kb on - strandat 2868.883 kb on + strandat 2868.886 kb on - strandat 2868.931 kb on + strandat 2868.960 kb on + strandat 2868.968 kb on - strandat 2868.970 kb on + strandat 2868.978 kb on - strandat 2869.189 kb on - strand, within BWI76_RS13755at 2869.191 kb on + strand, within BWI76_RS13755at 2869.264 kb on + strandat 2869.265 kb on + strandat 2869.293 kb on + strandat 2869.303 kb on + strandat 2869.310 kb on + strandat 2869.310 kb on - strandat 2869.387 kb on - strand, within BWI76_RS13760at 2869.392 kb on - strandat 2869.393 kb on + strand, within BWI76_RS13760at 2869.435 kb on - strandat 2869.460 kb on + strand, within BWI76_RS13760at 2869.468 kb on - strandat 2869.503 kb on - strandat 2869.549 kb on + strandat 2869.549 kb on + strandat 2869.549 kb on + strandat 2869.554 kb on + strandat 2869.557 kb on - strandat 2869.562 kb on - strandat 2869.581 kb on - strandat 2869.656 kb on + strandat 2869.661 kb on + strandat 2869.663 kb on + strandat 2869.664 kb on - strandat 2869.666 kb on + strandat 2869.669 kb on - strandat 2869.669 kb on - strandat 2869.679 kb on - strandat 2869.679 kb on - strandat 2869.993 kb on + strand, within BWI76_RS13765at 2870.009 kb on + strand, within BWI76_RS13765at 2870.014 kb on + strand, within BWI76_RS13765at 2870.101 kb on + strand, within BWI76_RS13765at 2870.288 kb on - strand, within BWI76_RS13765at 2870.288 kb on - strand, within BWI76_RS13765at 2870.342 kb on - strand, within BWI76_RS13765at 2870.347 kb on + strand, within BWI76_RS13765at 2870.352 kb on + strand, within BWI76_RS13765at 2870.355 kb on - strand, within BWI76_RS13765at 2870.355 kb on - strand, within BWI76_RS13765at 2870.472 kb on - strand, within BWI76_RS13765at 2870.501 kb on + strand, within BWI76_RS13765at 2870.501 kb on - strand, within BWI76_RS13765at 2870.700 kb on + strand, within BWI76_RS13765at 2870.700 kb on + strand, within BWI76_RS13765at 2870.708 kb on - strand, within BWI76_RS13765at 2870.708 kb on - strand, within BWI76_RS13765at 2870.708 kb on - strand, within BWI76_RS13765at 2870.743 kb on + strand, within BWI76_RS13765at 2870.765 kb on - strand, within BWI76_RS13765at 2870.806 kb on + strand, within BWI76_RS13765at 2870.906 kb on + strandat 2871.274 kb on + strand, within BWI76_RS13770at 2871.753 kb on - strand, within BWI76_RS13770at 2871.838 kb on + strand, within BWI76_RS13770

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
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2,868,865 - -3.0
2,868,883 + -0.2
2,868,886 - -2.3
2,868,931 + -0.1
2,868,960 + -0.4
2,868,968 - -2.0
2,868,970 + -0.3
2,868,978 - -0.7
2,869,189 - BWI76_RS13755 0.67 -2.6
2,869,191 + BWI76_RS13755 0.68 -2.2
2,869,264 + +0.0
2,869,265 + -1.4
2,869,293 + -1.2
2,869,303 + +1.0
2,869,310 + -0.8
2,869,310 - +0.9
2,869,387 - BWI76_RS13760 0.49 -1.9
2,869,392 - -0.4
2,869,393 + BWI76_RS13760 0.52 -2.0
2,869,435 - +2.1
2,869,460 + BWI76_RS13760 0.87 -2.4
2,869,468 - -0.9
2,869,503 - +1.1
2,869,549 + -0.5
2,869,549 + -1.2
2,869,549 + +1.1
2,869,554 + +1.1
2,869,557 - -3.1
2,869,562 - -1.9
2,869,581 - -0.4
2,869,656 + -2.2
2,869,661 + -1.2
2,869,663 + -0.8
2,869,664 - +0.1
2,869,666 + +2.1
2,869,669 - -0.4
2,869,669 - -2.3
2,869,679 - -0.2
2,869,679 - +0.2
2,869,993 + BWI76_RS13765 0.13 -3.3
2,870,009 + BWI76_RS13765 0.15 -1.9
2,870,014 + BWI76_RS13765 0.15 +0.2
2,870,101 + BWI76_RS13765 0.23 -2.8
2,870,288 - BWI76_RS13765 0.39 -0.8
2,870,288 - BWI76_RS13765 0.39 +0.7
2,870,342 - BWI76_RS13765 0.44 -2.4
2,870,347 + BWI76_RS13765 0.44 +1.4
2,870,352 + BWI76_RS13765 0.44 -1.6
2,870,355 - BWI76_RS13765 0.45 -1.6
2,870,355 - BWI76_RS13765 0.45 -0.4
2,870,472 - BWI76_RS13765 0.55 +1.3
2,870,501 + BWI76_RS13765 0.57 -0.4
2,870,501 - BWI76_RS13765 0.57 +0.0
2,870,700 + BWI76_RS13765 0.75 -1.4
2,870,700 + BWI76_RS13765 0.75 -1.6
2,870,708 - BWI76_RS13765 0.75 +1.1
2,870,708 - BWI76_RS13765 0.75 -0.1
2,870,708 - BWI76_RS13765 0.75 -3.3
2,870,743 + BWI76_RS13765 0.78 +0.5
2,870,765 - BWI76_RS13765 0.80 -0.4
2,870,806 + BWI76_RS13765 0.84 +0.0
2,870,906 + +0.3
2,871,274 + BWI76_RS13770 0.25 +0.6
2,871,753 - BWI76_RS13770 0.69 +0.4
2,871,838 + BWI76_RS13770 0.77 +0.6

Or see this region's nucleotide sequence