Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07110 and BWI76_RS07115 are separated by 221 nucleotides BWI76_RS07115 and BWI76_RS07120 are separated by 115 nucleotides BWI76_RS07120 and BWI76_RS07125 are separated by 333 nucleotides
BWI76_RS07110: BWI76_RS07110 - DNA-binding protein, at 1,493,434 to 1,493,891
_RS07110
BWI76_RS07115: BWI76_RS07115 - hypothetical protein, at 1,494,113 to 1,494,409
_RS07115
BWI76_RS07120: BWI76_RS07120 - LacI family transcriptional regulator, at 1,494,525 to 1,496,699
_RS07120
BWI76_RS07125: BWI76_RS07125 - hypothetical protein, at 1,497,033 to 1,497,857
_RS07125
Position (kb) 1494
1495
1496
1497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1493.576 kb on - strand, within BWI76_RS07110 at 1493.659 kb on - strand, within BWI76_RS07110 at 1493.668 kb on - strand, within BWI76_RS07110 at 1493.669 kb on - strand, within BWI76_RS07110 at 1493.697 kb on + strand, within BWI76_RS07110 at 1493.697 kb on + strand, within BWI76_RS07110 at 1493.697 kb on + strand, within BWI76_RS07110 at 1493.697 kb on + strand, within BWI76_RS07110 at 1493.697 kb on + strand, within BWI76_RS07110 at 1493.697 kb on + strand, within BWI76_RS07110 at 1493.733 kb on + strand, within BWI76_RS07110 at 1493.761 kb on + strand, within BWI76_RS07110 at 1493.939 kb on - strand at 1493.985 kb on - strand at 1493.991 kb on - strand at 1494.078 kb on + strand at 1494.109 kb on + strand at 1494.132 kb on + strand at 1494.138 kb on - strand at 1494.154 kb on - strand, within BWI76_RS07115 at 1494.154 kb on - strand, within BWI76_RS07115 at 1494.169 kb on - strand, within BWI76_RS07115 at 1494.169 kb on - strand, within BWI76_RS07115 at 1494.249 kb on + strand, within BWI76_RS07115 at 1494.269 kb on - strand, within BWI76_RS07115 at 1494.292 kb on - strand, within BWI76_RS07115 at 1494.302 kb on + strand, within BWI76_RS07115 at 1494.314 kb on + strand, within BWI76_RS07115 at 1494.314 kb on + strand at 1494.319 kb on + strand, within BWI76_RS07115 at 1494.319 kb on + strand, within BWI76_RS07115 at 1494.319 kb on + strand, within BWI76_RS07115 at 1494.319 kb on + strand, within BWI76_RS07115 at 1494.319 kb on + strand, within BWI76_RS07115 at 1494.327 kb on - strand, within BWI76_RS07115 at 1494.327 kb on - strand at 1494.327 kb on - strand, within BWI76_RS07115 at 1494.333 kb on + strand, within BWI76_RS07115 at 1494.366 kb on + strand, within BWI76_RS07115 at 1494.377 kb on + strand, within BWI76_RS07115 at 1494.395 kb on - strand at 1494.434 kb on + strand at 1494.434 kb on + strand at 1494.442 kb on - strand at 1494.442 kb on - strand at 1494.457 kb on + strand at 1494.465 kb on - strand at 1494.484 kb on - strand at 1494.505 kb on - strand at 1494.558 kb on + strand at 1494.571 kb on + strand at 1494.579 kb on - strand at 1494.579 kb on - strand at 1494.644 kb on + strand at 1494.652 kb on + strand at 1494.652 kb on + strand at 1494.652 kb on + strand at 1494.652 kb on + strand at 1494.652 kb on + strand at 1494.652 kb on - strand at 1494.660 kb on - strand at 1494.660 kb on - strand at 1494.660 kb on - strand at 1494.660 kb on - strand at 1494.660 kb on - strand at 1494.660 kb on - strand at 1494.660 kb on - strand at 1494.660 kb on - strand at 1494.677 kb on + strand at 1494.677 kb on + strand at 1494.677 kb on + strand at 1494.677 kb on + strand at 1494.677 kb on + strand at 1494.685 kb on - strand at 1494.685 kb on - strand at 1494.688 kb on + strand at 1494.728 kb on + strand at 1494.729 kb on + strand at 1494.736 kb on - strand at 1494.740 kb on + strand at 1494.775 kb on + strand, within BWI76_RS07120 at 1494.780 kb on + strand, within BWI76_RS07120 at 1494.783 kb on - strand, within BWI76_RS07120 at 1494.783 kb on - strand, within BWI76_RS07120 at 1494.785 kb on + strand, within BWI76_RS07120 at 1495.016 kb on - strand, within BWI76_RS07120 at 1495.192 kb on - strand, within BWI76_RS07120 at 1495.201 kb on - strand, within BWI76_RS07120 at 1495.202 kb on - strand, within BWI76_RS07120 at 1495.202 kb on - strand, within BWI76_RS07120 at 1495.208 kb on - strand, within BWI76_RS07120 at 1495.426 kb on + strand, within BWI76_RS07120 at 1495.481 kb on - strand, within BWI76_RS07120 at 1495.491 kb on - strand, within BWI76_RS07120 at 1495.491 kb on - strand, within BWI76_RS07120 at 1495.625 kb on + strand, within BWI76_RS07120 at 1495.631 kb on + strand, within BWI76_RS07120 at 1495.726 kb on + strand, within BWI76_RS07120 at 1495.839 kb on - strand, within BWI76_RS07120 at 1495.872 kb on + strand, within BWI76_RS07120 at 1495.872 kb on + strand, within BWI76_RS07120 at 1495.920 kb on + strand at 1496.029 kb on + strand, within BWI76_RS07120 at 1496.029 kb on + strand, within BWI76_RS07120 at 1496.037 kb on - strand, within BWI76_RS07120 at 1496.073 kb on - strand, within BWI76_RS07120 at 1496.207 kb on - strand, within BWI76_RS07120 at 1496.562 kb on - strand at 1496.582 kb on - strand at 1496.604 kb on - strand at 1496.912 kb on + strand at 1497.011 kb on + strand at 1497.184 kb on - strand, within BWI76_RS07125 at 1497.231 kb on + strand, within BWI76_RS07125 at 1497.231 kb on + strand, within BWI76_RS07125 at 1497.246 kb on + strand, within BWI76_RS07125 at 1497.246 kb on + strand, within BWI76_RS07125 at 1497.255 kb on + strand, within BWI76_RS07125 at 1497.392 kb on + strand, within BWI76_RS07125 at 1497.404 kb on + strand, within BWI76_RS07125 at 1497.412 kb on - strand, within BWI76_RS07125 at 1497.431 kb on + strand, within BWI76_RS07125 at 1497.562 kb on + strand, within BWI76_RS07125 at 1497.662 kb on + strand, within BWI76_RS07125 at 1497.662 kb on + strand at 1497.670 kb on - strand, within BWI76_RS07125 at 1497.670 kb on - strand, within BWI76_RS07125 at 1497.670 kb on - strand, within BWI76_RS07125 at 1497.670 kb on - strand, within BWI76_RS07125 at 1497.690 kb on + strand, within BWI76_RS07125 at 1497.690 kb on + strand, within BWI76_RS07125 at 1497.690 kb on + strand, within BWI76_RS07125 at 1497.690 kb on + strand, within BWI76_RS07125 at 1497.698 kb on - strand, within BWI76_RS07125 at 1497.698 kb on - strand, within BWI76_RS07125 at 1497.698 kb on - strand, within BWI76_RS07125
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 1,493,576 - BWI76_RS07110 0.31 -1.1 1,493,659 - BWI76_RS07110 0.49 +0.9 1,493,668 - BWI76_RS07110 0.51 -0.4 1,493,669 - BWI76_RS07110 0.51 -1.1 1,493,697 + BWI76_RS07110 0.57 -0.7 1,493,697 + BWI76_RS07110 0.57 +0.9 1,493,697 + BWI76_RS07110 0.57 +1.4 1,493,697 + BWI76_RS07110 0.57 -0.5 1,493,697 + BWI76_RS07110 0.57 -1.4 1,493,697 + BWI76_RS07110 0.57 -0.1 1,493,733 + BWI76_RS07110 0.65 -0.2 1,493,761 + BWI76_RS07110 0.71 +0.0 1,493,939 - +3.5 1,493,985 - +0.9 1,493,991 - -1.7 1,494,078 + +1.5 1,494,109 + -1.4 1,494,132 + -0.1 1,494,138 - -1.7 1,494,154 - BWI76_RS07115 0.14 -1.5 1,494,154 - BWI76_RS07115 0.14 +0.8 1,494,169 - BWI76_RS07115 0.19 -1.7 1,494,169 - BWI76_RS07115 0.19 +0.9 1,494,249 + BWI76_RS07115 0.46 +0.3 1,494,269 - BWI76_RS07115 0.53 -1.1 1,494,292 - BWI76_RS07115 0.60 +1.7 1,494,302 + BWI76_RS07115 0.64 -2.4 1,494,314 + BWI76_RS07115 0.68 -1.4 1,494,314 + -0.7 1,494,319 + BWI76_RS07115 0.69 +0.1 1,494,319 + BWI76_RS07115 0.69 -0.6 1,494,319 + BWI76_RS07115 0.69 +0.5 1,494,319 + BWI76_RS07115 0.69 -1.2 1,494,319 + BWI76_RS07115 0.69 +0.7 1,494,327 - BWI76_RS07115 0.72 -0.7 1,494,327 - -1.7 1,494,327 - BWI76_RS07115 0.72 +1.4 1,494,333 + BWI76_RS07115 0.74 +1.1 1,494,366 + BWI76_RS07115 0.85 -0.5 1,494,377 + BWI76_RS07115 0.89 +0.6 1,494,395 - -0.4 1,494,434 + +0.9 1,494,434 + +2.4 1,494,442 - +0.9 1,494,442 - +0.9 1,494,457 + -0.1 1,494,465 - -0.1 1,494,484 - -2.3 1,494,505 - -0.1 1,494,558 + +0.9 1,494,571 + +0.9 1,494,579 - -0.1 1,494,579 - -2.4 1,494,644 + +0.3 1,494,652 + -0.9 1,494,652 + -2.2 1,494,652 + -2.5 1,494,652 + -0.7 1,494,652 + -0.2 1,494,652 - -3.2 1,494,660 - -0.1 1,494,660 - +1.3 1,494,660 - -2.9 1,494,660 - -2.3 1,494,660 - -2.1 1,494,660 - +0.9 1,494,660 - -0.7 1,494,660 - -0.8 1,494,677 + -1.1 1,494,677 + -1.7 1,494,677 + +0.8 1,494,677 + -0.2 1,494,677 + +2.5 1,494,685 - -1.4 1,494,685 - -0.2 1,494,688 + +0.7 1,494,728 + -1.9 1,494,729 + -0.7 1,494,736 - -1.9 1,494,740 + -0.2 1,494,775 + BWI76_RS07120 0.11 -0.2 1,494,780 + BWI76_RS07120 0.12 -1.5 1,494,783 - BWI76_RS07120 0.12 -0.1 1,494,783 - BWI76_RS07120 0.12 -1.9 1,494,785 + BWI76_RS07120 0.12 -2.0 1,495,016 - BWI76_RS07120 0.23 +0.9 1,495,192 - BWI76_RS07120 0.31 +0.9 1,495,201 - BWI76_RS07120 0.31 -1.9 1,495,202 - BWI76_RS07120 0.31 -1.1 1,495,202 - BWI76_RS07120 0.31 -1.1 1,495,208 - BWI76_RS07120 0.31 -2.3 1,495,426 + BWI76_RS07120 0.41 -1.5 1,495,481 - BWI76_RS07120 0.44 -2.0 1,495,491 - BWI76_RS07120 0.44 -0.5 1,495,491 - BWI76_RS07120 0.44 -2.8 1,495,625 + BWI76_RS07120 0.51 -0.2 1,495,631 + BWI76_RS07120 0.51 -1.6 1,495,726 + BWI76_RS07120 0.55 -2.1 1,495,839 - BWI76_RS07120 0.60 -0.1 1,495,872 + BWI76_RS07120 0.62 -1.5 1,495,872 + BWI76_RS07120 0.62 -0.8 1,495,920 + +1.1 1,496,029 + BWI76_RS07120 0.69 -1.2 1,496,029 + BWI76_RS07120 0.69 -0.2 1,496,037 - BWI76_RS07120 0.70 +0.9 1,496,073 - BWI76_RS07120 0.71 -1.2 1,496,207 - BWI76_RS07120 0.77 +0.5 1,496,562 - +0.1 1,496,582 - +1.4 1,496,604 - -2.9 1,496,912 + -0.6 1,497,011 + -0.8 1,497,184 - BWI76_RS07125 0.18 -0.1 1,497,231 + BWI76_RS07125 0.24 -0.9 1,497,231 + BWI76_RS07125 0.24 -0.4 1,497,246 + BWI76_RS07125 0.26 +0.0 1,497,246 + BWI76_RS07125 0.26 -0.7 1,497,255 + BWI76_RS07125 0.27 +0.1 1,497,392 + BWI76_RS07125 0.44 +0.7 1,497,404 + BWI76_RS07125 0.45 -2.1 1,497,412 - BWI76_RS07125 0.46 -1.4 1,497,431 + BWI76_RS07125 0.48 -0.6 1,497,562 + BWI76_RS07125 0.64 -0.7 1,497,662 + BWI76_RS07125 0.76 +0.4 1,497,662 + +0.9 1,497,670 - BWI76_RS07125 0.77 +0.1 1,497,670 - BWI76_RS07125 0.77 -1.2 1,497,670 - BWI76_RS07125 0.77 -1.5 1,497,670 - BWI76_RS07125 0.77 +1.6 1,497,690 + BWI76_RS07125 0.80 +0.9 1,497,690 + BWI76_RS07125 0.80 +0.7 1,497,690 + BWI76_RS07125 0.80 +0.0 1,497,690 + BWI76_RS07125 0.80 -1.5 1,497,698 - BWI76_RS07125 0.81 -0.1 1,497,698 - BWI76_RS07125 0.81 +0.1 1,497,698 - BWI76_RS07125 0.81 +0.6
Or see this region's nucleotide sequence