Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03590 and BWI76_RS03595 are separated by 53 nucleotides BWI76_RS03595 and BWI76_RS03600 are separated by 15 nucleotides BWI76_RS03600 and BWI76_RS03605 are separated by 17 nucleotides
BWI76_RS03590: BWI76_RS03590 - acetaldehyde dehydrogenase (acetylating), at 744,308 to 745,909
_RS03590
BWI76_RS03595: BWI76_RS03595 - ethanolamine utilization protein EutM, at 745,963 to 746,241
_RS03595
BWI76_RS03600: BWI76_RS03600 - BMC domain-containing protein, at 746,257 to 746,541
_RS03600
BWI76_RS03605: BWI76_RS03605 - BMC domain-containing protein, at 746,559 to 746,837
_RS03605
Position (kb) 745
746
747 Strain fitness (log2 ratio) -2
-1
0
1 at 744.984 kb on - strand, within BWI76_RS03590 at 745.253 kb on - strand, within BWI76_RS03590 at 745.306 kb on - strand, within BWI76_RS03590 at 745.306 kb on - strand, within BWI76_RS03590 at 745.354 kb on + strand, within BWI76_RS03590 at 745.362 kb on - strand, within BWI76_RS03590 at 745.450 kb on + strand, within BWI76_RS03590 at 745.869 kb on - strand at 745.883 kb on + strand at 746.034 kb on - strand, within BWI76_RS03595 at 746.173 kb on - strand, within BWI76_RS03595 at 746.505 kb on - strand, within BWI76_RS03600 at 746.523 kb on + strand at 746.557 kb on - strand at 746.557 kb on - strand at 746.695 kb on + strand, within BWI76_RS03605 at 746.725 kb on - strand, within BWI76_RS03605 at 746.769 kb on - strand, within BWI76_RS03605 at 746.819 kb on + strand at 746.819 kb on + strand at 746.827 kb on - strand at 746.827 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 744,984 - BWI76_RS03590 0.42 -1.9 745,253 - BWI76_RS03590 0.59 -1.0 745,306 - BWI76_RS03590 0.62 +0.7 745,306 - BWI76_RS03590 0.62 +1.1 745,354 + BWI76_RS03590 0.65 +0.1 745,362 - BWI76_RS03590 0.66 -0.5 745,450 + BWI76_RS03590 0.71 +0.3 745,869 - +0.0 745,883 + -0.3 746,034 - BWI76_RS03595 0.25 -0.7 746,173 - BWI76_RS03595 0.75 -1.5 746,505 - BWI76_RS03600 0.87 -0.7 746,523 + +0.4 746,557 - -0.7 746,557 - -2.7 746,695 + BWI76_RS03605 0.49 +1.2 746,725 - BWI76_RS03605 0.59 +0.6 746,769 - BWI76_RS03605 0.75 +0.7 746,819 + +0.4 746,819 + +0.0 746,827 - +0.5 746,827 - +0.6
Or see this region's nucleotide sequence