Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03095 and BWI76_RS03100 are separated by 41 nucleotides BWI76_RS03100 and BWI76_RS03105 are separated by 24 nucleotides BWI76_RS03105 and BWI76_RS03110 are separated by 168 nucleotides
BWI76_RS03095: BWI76_RS03095 - Inositol 2-dehydrogenase (EC 1.1.1.18) <small>(from data)</small>, at 637,168 to 638,181
_RS03095
BWI76_RS03100: BWI76_RS03100 - protein iolH, at 638,223 to 639,107
_RS03100
BWI76_RS03105: BWI76_RS03105 - myo-inosose-2 dehydratase, at 639,132 to 640,031
_RS03105
BWI76_RS03110: BWI76_RS03110 - MFS transporter, at 640,200 to 641,699
_RS03110
Position (kb) 639
640
641 Strain fitness (log2 ratio) -1
0
1 at 638.203 kb on + strand at 638.221 kb on - strand at 638.257 kb on + strand at 638.597 kb on - strand, within BWI76_RS03100 at 638.782 kb on + strand, within BWI76_RS03100 at 638.801 kb on - strand, within BWI76_RS03100 at 638.887 kb on - strand, within BWI76_RS03100 at 638.951 kb on + strand, within BWI76_RS03100 at 638.959 kb on - strand, within BWI76_RS03100 at 639.037 kb on - strand at 639.070 kb on + strand at 639.071 kb on - strand at 639.071 kb on - strand at 639.214 kb on - strand at 639.769 kb on - strand, within BWI76_RS03105 at 640.112 kb on - strand at 640.133 kb on + strand at 640.141 kb on - strand at 640.191 kb on - strand at 640.247 kb on - strand at 640.352 kb on - strand, within BWI76_RS03110 at 640.388 kb on - strand, within BWI76_RS03110 at 640.447 kb on - strand, within BWI76_RS03110 at 640.660 kb on - strand, within BWI76_RS03110 at 640.894 kb on - strand, within BWI76_RS03110 at 640.981 kb on - strand, within BWI76_RS03110 at 641.008 kb on - strand, within BWI76_RS03110
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 638,203 + +0.4 638,221 - -0.6 638,257 + -0.1 638,597 - BWI76_RS03100 0.42 -1.1 638,782 + BWI76_RS03100 0.63 +0.2 638,801 - BWI76_RS03100 0.65 -0.7 638,887 - BWI76_RS03100 0.75 -0.2 638,951 + BWI76_RS03100 0.82 +0.1 638,959 - BWI76_RS03100 0.83 +0.3 639,037 - -0.5 639,070 + +0.1 639,071 - -1.2 639,071 - +0.4 639,214 - +0.2 639,769 - BWI76_RS03105 0.71 -1.0 640,112 - -0.3 640,133 + -0.3 640,141 - -0.5 640,191 - +0.3 640,247 - +0.2 640,352 - BWI76_RS03110 0.10 +0.4 640,388 - BWI76_RS03110 0.13 +0.4 640,447 - BWI76_RS03110 0.16 -1.6 640,660 - BWI76_RS03110 0.31 -1.2 640,894 - BWI76_RS03110 0.46 +0.2 640,981 - BWI76_RS03110 0.52 +0.1 641,008 - BWI76_RS03110 0.54 -0.0
Or see this region's nucleotide sequence