Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03075 and BWI76_RS03080 are separated by 196 nucleotides BWI76_RS03080 and BWI76_RS03085 are separated by 151 nucleotides
BWI76_RS03075: BWI76_RS03075 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) <small>(from data)</small>, at 630,724 to 631,533
_RS03075
BWI76_RS03080: BWI76_RS03080 - (Fe-S)-cluster assembly protein, at 631,730 to 632,587
_RS03080
BWI76_RS03085: BWI76_RS03085 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) <small>(from data)</small>, at 632,739 to 634,652
_RS03085
Position (kb) 631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 630.819 kb on - strand, within BWI76_RS03075 at 630.869 kb on + strand, within BWI76_RS03075 at 630.899 kb on - strand, within BWI76_RS03075 at 630.926 kb on + strand, within BWI76_RS03075 at 630.990 kb on + strand, within BWI76_RS03075 at 630.990 kb on + strand, within BWI76_RS03075 at 630.998 kb on - strand, within BWI76_RS03075 at 631.193 kb on - strand, within BWI76_RS03075 at 631.350 kb on + strand, within BWI76_RS03075 at 631.367 kb on + strand, within BWI76_RS03075 at 631.471 kb on + strand at 631.508 kb on + strand at 631.639 kb on - strand at 631.711 kb on + strand at 631.852 kb on + strand, within BWI76_RS03080 at 631.860 kb on - strand, within BWI76_RS03080 at 631.932 kb on + strand, within BWI76_RS03080 at 632.081 kb on - strand, within BWI76_RS03080 at 632.086 kb on - strand, within BWI76_RS03080 at 632.231 kb on - strand, within BWI76_RS03080 at 632.591 kb on - strand at 632.629 kb on - strand at 632.758 kb on - strand at 632.771 kb on + strand at 632.771 kb on + strand at 632.771 kb on + strand at 632.839 kb on + strand at 632.928 kb on + strand at 632.928 kb on + strand at 633.035 kb on + strand, within BWI76_RS03085 at 633.035 kb on + strand, within BWI76_RS03085 at 633.281 kb on + strand, within BWI76_RS03085 at 633.286 kb on + strand, within BWI76_RS03085 at 633.289 kb on - strand, within BWI76_RS03085
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 630,819 - BWI76_RS03075 0.12 +0.3 630,869 + BWI76_RS03075 0.18 -1.6 630,899 - BWI76_RS03075 0.22 -0.0 630,926 + BWI76_RS03075 0.25 -0.1 630,990 + BWI76_RS03075 0.33 -0.4 630,990 + BWI76_RS03075 0.33 +0.1 630,998 - BWI76_RS03075 0.34 -0.4 631,193 - BWI76_RS03075 0.58 -0.3 631,350 + BWI76_RS03075 0.77 +0.9 631,367 + BWI76_RS03075 0.79 -0.1 631,471 + -0.6 631,508 + +0.4 631,639 - -0.1 631,711 + -3.3 631,852 + BWI76_RS03080 0.14 -0.1 631,860 - BWI76_RS03080 0.15 -1.1 631,932 + BWI76_RS03080 0.24 -0.9 632,081 - BWI76_RS03080 0.41 -1.7 632,086 - BWI76_RS03080 0.41 -0.6 632,231 - BWI76_RS03080 0.58 -0.6 632,591 - -0.2 632,629 - -1.1 632,758 - +1.2 632,771 + -0.3 632,771 + +0.4 632,771 + +0.1 632,839 + +0.0 632,928 + +0.8 632,928 + -2.1 633,035 + BWI76_RS03085 0.15 +1.0 633,035 + BWI76_RS03085 0.15 +0.1 633,281 + BWI76_RS03085 0.28 +0.8 633,286 + BWI76_RS03085 0.29 -0.5 633,289 - BWI76_RS03085 0.29 -1.5
Or see this region's nucleotide sequence