Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02870 and BWI76_RS02875 are separated by 21 nucleotides BWI76_RS02875 and BWI76_RS02880 are separated by 12 nucleotides BWI76_RS02880 and BWI76_RS02885 are separated by 42 nucleotides
BWI76_RS02870: BWI76_RS02870 - hypothetical protein, at 586,737 to 587,036
_RS02870
BWI76_RS02875: BWI76_RS02875 - membrane protein, at 587,058 to 587,834
_RS02875
BWI76_RS02880: BWI76_RS02880 - membrane protein, at 587,847 to 588,491
_RS02880
BWI76_RS02885: BWI76_RS02885 - dihydroorotase, at 588,534 to 589,667
_RS02885
Position (kb) 587
588
589 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 586.881 kb on - strand, within BWI76_RS02870 at 586.963 kb on + strand at 587.404 kb on + strand, within BWI76_RS02875 at 587.446 kb on + strand, within BWI76_RS02875 at 587.615 kb on + strand, within BWI76_RS02875 at 587.640 kb on - strand, within BWI76_RS02875 at 587.645 kb on - strand, within BWI76_RS02875 at 587.670 kb on - strand, within BWI76_RS02875 at 587.810 kb on - strand at 587.863 kb on - strand at 587.886 kb on + strand at 587.914 kb on - strand, within BWI76_RS02880 at 587.942 kb on - strand, within BWI76_RS02880 at 588.116 kb on - strand, within BWI76_RS02880 at 588.118 kb on + strand, within BWI76_RS02880 at 588.270 kb on + strand, within BWI76_RS02880 at 588.369 kb on - strand, within BWI76_RS02880 at 588.554 kb on - strand at 588.571 kb on + strand at 588.624 kb on - strand at 588.684 kb on + strand, within BWI76_RS02885 at 588.773 kb on - strand, within BWI76_RS02885 at 588.863 kb on + strand, within BWI76_RS02885 at 588.871 kb on - strand, within BWI76_RS02885 at 588.871 kb on - strand, within BWI76_RS02885 at 588.913 kb on - strand, within BWI76_RS02885 at 589.224 kb on + strand, within BWI76_RS02885 at 589.433 kb on - strand, within BWI76_RS02885
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 586,881 - BWI76_RS02870 0.48 -0.7 586,963 + +0.9 587,404 + BWI76_RS02875 0.45 -2.9 587,446 + BWI76_RS02875 0.50 -0.1 587,615 + BWI76_RS02875 0.72 +0.2 587,640 - BWI76_RS02875 0.75 +0.3 587,645 - BWI76_RS02875 0.76 +0.8 587,670 - BWI76_RS02875 0.79 +0.3 587,810 - -0.4 587,863 - +0.0 587,886 + +1.9 587,914 - BWI76_RS02880 0.10 -0.1 587,942 - BWI76_RS02880 0.15 -2.5 588,116 - BWI76_RS02880 0.42 -0.1 588,118 + BWI76_RS02880 0.42 -1.9 588,270 + BWI76_RS02880 0.66 -0.0 588,369 - BWI76_RS02880 0.81 +0.0 588,554 - +0.2 588,571 + +0.4 588,624 - -1.1 588,684 + BWI76_RS02885 0.13 +0.3 588,773 - BWI76_RS02885 0.21 +1.5 588,863 + BWI76_RS02885 0.29 +0.9 588,871 - BWI76_RS02885 0.30 +0.3 588,871 - BWI76_RS02885 0.30 +0.9 588,913 - BWI76_RS02885 0.33 -0.5 589,224 + BWI76_RS02885 0.61 -0.9 589,433 - BWI76_RS02885 0.79 +0.1
Or see this region's nucleotide sequence