Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00705 and BWI76_RS00710 are separated by 71 nucleotides BWI76_RS00710 and BWI76_RS00715 are separated by 91 nucleotides BWI76_RS00715 and BWI76_RS00720 overlap by 4 nucleotides BWI76_RS00720 and BWI76_RS00725 are separated by 149 nucleotides
BWI76_RS00705: BWI76_RS00705 - superoxide dismutase, at 144,071 to 144,691
_RS00705
BWI76_RS00710: BWI76_RS00710 - 6-N-hydroxylaminopurine resistance protein, at 144,763 to 145,437
_RS00710
BWI76_RS00715: BWI76_RS00715 - two-component sensor histidine kinase, at 145,529 to 146,902
_RS00715
BWI76_RS00720: BWI76_RS00720 - DNA-binding response regulator, at 146,899 to 147,597
_RS00720
BWI76_RS00725: BWI76_RS00725 - periplasmic repressor CpxP, at 147,747 to 148,250
_RS00725
Position (kb) 145
146
147 Strain fitness (log2 ratio) -2
-1
0
1 at 144.704 kb on - strand at 144.802 kb on - strand at 145.079 kb on + strand, within BWI76_RS00710 at 145.087 kb on - strand, within BWI76_RS00710 at 145.478 kb on + strand at 145.560 kb on + strand at 145.686 kb on - strand, within BWI76_RS00715 at 146.062 kb on + strand, within BWI76_RS00715 at 146.068 kb on + strand, within BWI76_RS00715 at 146.146 kb on - strand at 146.232 kb on - strand, within BWI76_RS00715 at 146.232 kb on - strand, within BWI76_RS00715 at 146.345 kb on - strand, within BWI76_RS00715 at 146.348 kb on + strand, within BWI76_RS00715 at 146.554 kb on + strand, within BWI76_RS00715 at 147.037 kb on + strand, within BWI76_RS00720 at 147.129 kb on + strand, within BWI76_RS00720 at 147.356 kb on - strand, within BWI76_RS00720 at 147.524 kb on - strand, within BWI76_RS00720 at 147.661 kb on + strand at 147.669 kb on - strand at 147.669 kb on - strand at 147.861 kb on - strand, within BWI76_RS00725 at 147.897 kb on - strand, within BWI76_RS00725
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL remove 144,704 - +1.0 144,802 - +0.4 145,079 + BWI76_RS00710 0.47 +0.3 145,087 - BWI76_RS00710 0.48 +0.7 145,478 + +0.6 145,560 + +0.0 145,686 - BWI76_RS00715 0.11 +0.0 146,062 + BWI76_RS00715 0.39 -1.0 146,068 + BWI76_RS00715 0.39 +0.0 146,146 - +1.0 146,232 - BWI76_RS00715 0.51 -1.0 146,232 - BWI76_RS00715 0.51 -2.4 146,345 - BWI76_RS00715 0.59 +1.0 146,348 + BWI76_RS00715 0.60 +1.0 146,554 + BWI76_RS00715 0.75 +1.0 147,037 + BWI76_RS00720 0.20 -2.0 147,129 + BWI76_RS00720 0.33 -1.7 147,356 - BWI76_RS00720 0.65 +1.0 147,524 - BWI76_RS00720 0.89 -1.0 147,661 + +1.2 147,669 - -2.0 147,669 - -1.8 147,861 - BWI76_RS00725 0.23 -0.3 147,897 - BWI76_RS00725 0.30 +0.2
Or see this region's nucleotide sequence