Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_845

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_844 and Pf6N2E2_845 are separated by 112 nucleotidesPf6N2E2_845 and Pf6N2E2_846 are separated by 311 nucleotides Pf6N2E2_844 - Ribose-phosphate pyrophosphokinase (EC 2.7.6.1), at 989,411 to 990,403 _844 Pf6N2E2_845 - phosphoribosyltransferase, at 990,516 to 991,082 _845 Pf6N2E2_846 - Universal stress protein family 5, at 991,394 to 992,284 _846 Position (kb) 990 991 992Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 989.611 kb on + strand, within Pf6N2E2_844at 989.612 kb on - strand, within Pf6N2E2_844at 989.812 kb on + strand, within Pf6N2E2_844at 989.813 kb on - strand, within Pf6N2E2_844at 989.885 kb on + strand, within Pf6N2E2_844at 989.885 kb on + strand, within Pf6N2E2_844at 989.885 kb on + strand, within Pf6N2E2_844at 989.886 kb on - strand, within Pf6N2E2_844at 989.886 kb on - strand, within Pf6N2E2_844at 989.886 kb on - strand, within Pf6N2E2_844at 989.886 kb on - strand, within Pf6N2E2_844at 990.055 kb on - strand, within Pf6N2E2_844at 990.055 kb on - strand, within Pf6N2E2_844at 990.114 kb on + strand, within Pf6N2E2_844at 990.220 kb on - strand, within Pf6N2E2_844at 990.220 kb on - strand, within Pf6N2E2_844at 990.236 kb on + strand, within Pf6N2E2_844at 990.294 kb on + strand, within Pf6N2E2_844at 990.295 kb on - strand, within Pf6N2E2_844at 990.295 kb on - strand, within Pf6N2E2_844at 990.295 kb on - strand, within Pf6N2E2_844at 990.354 kb on + strandat 990.354 kb on + strandat 990.354 kb on + strandat 990.354 kb on + strandat 990.355 kb on - strandat 990.355 kb on - strandat 990.453 kb on + strandat 990.454 kb on - strandat 990.454 kb on - strandat 990.454 kb on - strandat 990.554 kb on - strandat 990.554 kb on - strandat 990.554 kb on - strandat 990.554 kb on - strandat 990.615 kb on + strand, within Pf6N2E2_845at 990.615 kb on + strand, within Pf6N2E2_845at 990.616 kb on - strand, within Pf6N2E2_845at 990.616 kb on - strand, within Pf6N2E2_845at 990.616 kb on - strand, within Pf6N2E2_845at 990.654 kb on - strand, within Pf6N2E2_845at 990.670 kb on - strand, within Pf6N2E2_845at 990.677 kb on + strand, within Pf6N2E2_845at 990.773 kb on + strand, within Pf6N2E2_845at 990.773 kb on + strand, within Pf6N2E2_845at 990.773 kb on + strand, within Pf6N2E2_845at 990.823 kb on + strand, within Pf6N2E2_845at 990.823 kb on + strand, within Pf6N2E2_845at 990.824 kb on - strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.827 kb on + strand, within Pf6N2E2_845at 990.828 kb on - strand, within Pf6N2E2_845at 990.828 kb on - strand, within Pf6N2E2_845at 990.828 kb on - strand, within Pf6N2E2_845at 990.828 kb on - strand, within Pf6N2E2_845at 990.828 kb on - strand, within Pf6N2E2_845at 990.913 kb on + strand, within Pf6N2E2_845at 990.913 kb on + strand, within Pf6N2E2_845at 990.914 kb on - strand, within Pf6N2E2_845at 990.914 kb on - strand, within Pf6N2E2_845at 990.914 kb on - strand, within Pf6N2E2_845at 990.914 kb on - strand, within Pf6N2E2_845at 990.914 kb on - strand, within Pf6N2E2_845at 991.046 kb on - strandat 991.046 kb on - strandat 991.046 kb on - strandat 991.046 kb on - strandat 991.071 kb on + strandat 991.072 kb on - strandat 991.101 kb on - strandat 991.113 kb on + strandat 991.113 kb on + strandat 991.113 kb on + strandat 991.114 kb on - strandat 991.114 kb on - strandat 991.114 kb on - strandat 991.117 kb on + strandat 991.117 kb on + strandat 991.118 kb on - strandat 991.118 kb on - strandat 991.126 kb on + strandat 991.255 kb on - strandat 991.255 kb on - strandat 991.255 kb on - strandat 991.261 kb on + strandat 991.261 kb on + strandat 991.262 kb on - strandat 991.262 kb on - strandat 991.262 kb on - strandat 991.262 kb on - strandat 991.262 kb on - strandat 991.262 kb on - strandat 991.262 kb on - strandat 991.263 kb on + strandat 991.263 kb on + strandat 991.263 kb on + strandat 991.263 kb on + strandat 991.263 kb on + strandat 991.263 kb on + strandat 991.264 kb on - strandat 991.264 kb on - strandat 991.264 kb on - strandat 991.264 kb on - strandat 991.264 kb on - strandat 991.264 kb on - strandat 991.334 kb on + strandat 991.334 kb on + strandat 991.334 kb on + strandat 991.335 kb on - strandat 991.335 kb on - strandat 991.335 kb on - strandat 991.335 kb on - strandat 991.403 kb on + strandat 991.413 kb on + strandat 991.413 kb on + strandat 991.577 kb on + strand, within Pf6N2E2_846at 991.578 kb on - strand, within Pf6N2E2_846at 991.814 kb on + strand, within Pf6N2E2_846at 991.815 kb on - strand, within Pf6N2E2_846at 991.970 kb on + strand, within Pf6N2E2_846at 991.970 kb on + strand, within Pf6N2E2_846at 991.994 kb on + strand, within Pf6N2E2_846at 991.994 kb on + strand, within Pf6N2E2_846at 991.994 kb on + strand, within Pf6N2E2_846at 991.994 kb on + strand, within Pf6N2E2_846at 991.994 kb on + strand, within Pf6N2E2_846at 991.994 kb on + strand, within Pf6N2E2_846at 991.994 kb on + strand, within Pf6N2E2_846at 991.994 kb on + strand, within Pf6N2E2_846at 991.994 kb on + strand, within Pf6N2E2_846at 991.995 kb on - strand, within Pf6N2E2_846at 991.995 kb on - strand, within Pf6N2E2_846at 991.995 kb on - strand, within Pf6N2E2_846at 991.995 kb on - strand, within Pf6N2E2_846at 991.995 kb on - strand, within Pf6N2E2_846at 991.995 kb on - strand, within Pf6N2E2_846

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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989,611 + Pf6N2E2_844 0.20 +0.8
989,612 - Pf6N2E2_844 0.20 -0.2
989,812 + Pf6N2E2_844 0.40 -1.4
989,813 - Pf6N2E2_844 0.40 -1.2
989,885 + Pf6N2E2_844 0.48 -0.6
989,885 + Pf6N2E2_844 0.48 -0.8
989,885 + Pf6N2E2_844 0.48 -1.8
989,886 - Pf6N2E2_844 0.48 +0.4
989,886 - Pf6N2E2_844 0.48 +1.1
989,886 - Pf6N2E2_844 0.48 -0.8
989,886 - Pf6N2E2_844 0.48 +3.4
990,055 - Pf6N2E2_844 0.65 -1.3
990,055 - Pf6N2E2_844 0.65 -0.5
990,114 + Pf6N2E2_844 0.71 +1.5
990,220 - Pf6N2E2_844 0.81 +0.8
990,220 - Pf6N2E2_844 0.81 -0.2
990,236 + Pf6N2E2_844 0.83 -0.2
990,294 + Pf6N2E2_844 0.89 -0.8
990,295 - Pf6N2E2_844 0.89 -0.2
990,295 - Pf6N2E2_844 0.89 +0.8
990,295 - Pf6N2E2_844 0.89 +2.0
990,354 + -0.2
990,354 + +1.4
990,354 + -0.3
990,354 + -0.0
990,355 - +0.2
990,355 - +0.5
990,453 + +1.5
990,454 - +0.0
990,454 - -1.5
990,454 - +0.2
990,554 - -0.2
990,554 - -1.7
990,554 - +0.2
990,554 - +1.5
990,615 + Pf6N2E2_845 0.17 -0.0
990,615 + Pf6N2E2_845 0.17 +0.1
990,616 - Pf6N2E2_845 0.18 -0.8
990,616 - Pf6N2E2_845 0.18 -0.5
990,616 - Pf6N2E2_845 0.18 +0.4
990,654 - Pf6N2E2_845 0.24 +0.6
990,670 - Pf6N2E2_845 0.27 +0.4
990,677 + Pf6N2E2_845 0.28 +0.8
990,773 + Pf6N2E2_845 0.45 +0.9
990,773 + Pf6N2E2_845 0.45 -0.2
990,773 + Pf6N2E2_845 0.45 -1.2
990,823 + Pf6N2E2_845 0.54 +1.2
990,823 + Pf6N2E2_845 0.54 -1.5
990,824 - Pf6N2E2_845 0.54 -0.0
990,827 + Pf6N2E2_845 0.55 +0.1
990,827 + Pf6N2E2_845 0.55 +0.6
990,827 + Pf6N2E2_845 0.55 -0.5
990,827 + Pf6N2E2_845 0.55 -0.4
990,827 + Pf6N2E2_845 0.55 +1.3
990,827 + Pf6N2E2_845 0.55 -1.5
990,827 + Pf6N2E2_845 0.55 +0.8
990,827 + Pf6N2E2_845 0.55 -1.3
990,828 - Pf6N2E2_845 0.55 +2.1
990,828 - Pf6N2E2_845 0.55 -1.2
990,828 - Pf6N2E2_845 0.55 +0.8
990,828 - Pf6N2E2_845 0.55 +0.4
990,828 - Pf6N2E2_845 0.55 +1.1
990,913 + Pf6N2E2_845 0.70 +1.8
990,913 + Pf6N2E2_845 0.70 +0.8
990,914 - Pf6N2E2_845 0.70 +3.8
990,914 - Pf6N2E2_845 0.70 +1.4
990,914 - Pf6N2E2_845 0.70 -2.8
990,914 - Pf6N2E2_845 0.70 +0.6
990,914 - Pf6N2E2_845 0.70 +3.1
991,046 - -1.2
991,046 - -1.5
991,046 - +1.6
991,046 - +1.4
991,071 + +0.2
991,072 - -1.6
991,101 - -0.0
991,113 + -1.4
991,113 + +1.8
991,113 + -1.2
991,114 - +0.1
991,114 - -0.4
991,114 - -1.8
991,117 + -0.9
991,117 + -1.8
991,118 - +0.2
991,118 - +0.8
991,126 + -0.2
991,255 - +0.6
991,255 - -1.4
991,255 - +0.1
991,261 + -0.2
991,261 + +2.4
991,262 - -0.4
991,262 - -0.8
991,262 - -0.2
991,262 - +0.8
991,262 - -0.2
991,262 - +0.8
991,262 - -0.8
991,263 + +0.2
991,263 + +0.4
991,263 + -1.2
991,263 + -2.0
991,263 + +0.8
991,263 + +0.2
991,264 - +0.6
991,264 - +0.4
991,264 - +0.8
991,264 - +1.4
991,264 - -1.0
991,264 - -0.5
991,334 + -1.4
991,334 + +0.8
991,334 + +0.6
991,335 - -0.5
991,335 - +0.8
991,335 - -1.2
991,335 - +0.3
991,403 + -0.8
991,413 + +1.1
991,413 + +0.8
991,577 + Pf6N2E2_846 0.21 -1.4
991,578 - Pf6N2E2_846 0.21 -1.4
991,814 + Pf6N2E2_846 0.47 -1.6
991,815 - Pf6N2E2_846 0.47 -1.5
991,970 + Pf6N2E2_846 0.65 +0.2
991,970 + Pf6N2E2_846 0.65 -0.8
991,994 + Pf6N2E2_846 0.67 -0.8
991,994 + Pf6N2E2_846 0.67 -0.8
991,994 + Pf6N2E2_846 0.67 +0.4
991,994 + Pf6N2E2_846 0.67 -0.9
991,994 + Pf6N2E2_846 0.67 -1.2
991,994 + Pf6N2E2_846 0.67 +0.4
991,994 + Pf6N2E2_846 0.67 -1.3
991,994 + Pf6N2E2_846 0.67 +0.5
991,994 + Pf6N2E2_846 0.67 +0.4
991,995 - Pf6N2E2_846 0.67 -0.2
991,995 - Pf6N2E2_846 0.67 -0.2
991,995 - Pf6N2E2_846 0.67 +0.8
991,995 - Pf6N2E2_846 0.67 -0.8
991,995 - Pf6N2E2_846 0.67 +2.1
991,995 - Pf6N2E2_846 0.67 +0.3

Or see this region's nucleotide sequence