Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5874 and Pf6N2E2_5875 are separated by 232 nucleotides Pf6N2E2_5875 and Pf6N2E2_5876 are separated by 30 nucleotides Pf6N2E2_5876 and Pf6N2E2_5877 overlap by 4 nucleotides Pf6N2E2_5877 and Pf6N2E2_5878 are separated by 52 nucleotides
Pf6N2E2_5874 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 6,694,316 to 6,696,400
_5874
Pf6N2E2_5875 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), at 6,696,633 to 6,697,664
_5875
Pf6N2E2_5876 - Lipase (EC 3.1.1.3), at 6,697,695 to 6,698,042
_5876
Pf6N2E2_5877 - Phosphohistidine phosphatase SixA, at 6,698,039 to 6,698,491
_5877
Pf6N2E2_5878 - FIG002571: 4-hydroxybenzoyl-CoA thioesterase domain protein, at 6,698,544 to 6,698,987
_5878
Position (kb)
6696
6697
6698 Strain fitness (log2 ratio)
-1
0
1
2 at 6695.667 kb on + strand, within Pf6N2E2_5874 at 6695.667 kb on + strand, within Pf6N2E2_5874 at 6695.667 kb on + strand, within Pf6N2E2_5874 at 6695.667 kb on + strand, within Pf6N2E2_5874 at 6695.667 kb on + strand, within Pf6N2E2_5874 at 6695.667 kb on + strand, within Pf6N2E2_5874 at 6695.668 kb on - strand, within Pf6N2E2_5874 at 6695.668 kb on - strand, within Pf6N2E2_5874 at 6695.673 kb on + strand, within Pf6N2E2_5874 at 6695.720 kb on - strand, within Pf6N2E2_5874 at 6695.720 kb on - strand, within Pf6N2E2_5874 at 6696.097 kb on - strand, within Pf6N2E2_5874 at 6696.119 kb on + strand, within Pf6N2E2_5874 at 6696.119 kb on + strand, within Pf6N2E2_5874 at 6696.119 kb on + strand, within Pf6N2E2_5874 at 6696.119 kb on + strand, within Pf6N2E2_5874 at 6696.120 kb on - strand, within Pf6N2E2_5874 at 6696.159 kb on + strand, within Pf6N2E2_5874 at 6696.159 kb on + strand, within Pf6N2E2_5874 at 6696.160 kb on - strand, within Pf6N2E2_5874 at 6696.160 kb on - strand, within Pf6N2E2_5874 at 6696.402 kb on - strand at 6696.402 kb on - strand at 6696.594 kb on + strand at 6696.594 kb on + strand at 6696.594 kb on + strand at 6696.594 kb on + strand at 6696.594 kb on + strand at 6696.594 kb on + strand at 6696.594 kb on + strand at 6696.595 kb on - strand at 6696.595 kb on - strand at 6696.596 kb on + strand at 6696.596 kb on + strand at 6696.619 kb on + strand at 6696.638 kb on + strand at 6696.638 kb on + strand at 6696.638 kb on + strand at 6696.639 kb on - strand at 6696.639 kb on - strand at 6697.533 kb on + strand, within Pf6N2E2_5875 at 6697.836 kb on + strand, within Pf6N2E2_5876 at 6697.836 kb on + strand, within Pf6N2E2_5876 at 6697.900 kb on + strand, within Pf6N2E2_5876 at 6697.901 kb on - strand, within Pf6N2E2_5876 at 6697.901 kb on - strand, within Pf6N2E2_5876 at 6697.901 kb on - strand, within Pf6N2E2_5876 at 6697.901 kb on - strand, within Pf6N2E2_5876 at 6698.038 kb on + strand at 6698.038 kb on + strand at 6698.039 kb on - strand at 6698.181 kb on - strand, within Pf6N2E2_5877 at 6698.181 kb on - strand, within Pf6N2E2_5877 at 6698.181 kb on - strand, within Pf6N2E2_5877 at 6698.181 kb on - strand, within Pf6N2E2_5877 at 6698.181 kb on - strand, within Pf6N2E2_5877 at 6698.600 kb on + strand, within Pf6N2E2_5878 at 6698.600 kb on + strand, within Pf6N2E2_5878 at 6698.601 kb on - strand, within Pf6N2E2_5878
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 6,695,667 + Pf6N2E2_5874 0.65 +0.1 6,695,667 + Pf6N2E2_5874 0.65 -0.9 6,695,667 + Pf6N2E2_5874 0.65 -0.5 6,695,667 + Pf6N2E2_5874 0.65 +0.5 6,695,667 + Pf6N2E2_5874 0.65 -1.6 6,695,667 + Pf6N2E2_5874 0.65 -0.1 6,695,668 - Pf6N2E2_5874 0.65 +0.2 6,695,668 - Pf6N2E2_5874 0.65 +0.4 6,695,673 + Pf6N2E2_5874 0.65 +0.5 6,695,720 - Pf6N2E2_5874 0.67 +0.5 6,695,720 - Pf6N2E2_5874 0.67 +1.5 6,696,097 - Pf6N2E2_5874 0.85 +1.1 6,696,119 + Pf6N2E2_5874 0.86 +0.7 6,696,119 + Pf6N2E2_5874 0.86 +0.6 6,696,119 + Pf6N2E2_5874 0.86 -0.2 6,696,119 + Pf6N2E2_5874 0.86 -0.0 6,696,120 - Pf6N2E2_5874 0.87 -0.9 6,696,159 + Pf6N2E2_5874 0.88 +1.4 6,696,159 + Pf6N2E2_5874 0.88 -0.5 6,696,160 - Pf6N2E2_5874 0.88 -0.5 6,696,160 - Pf6N2E2_5874 0.88 -0.1 6,696,402 - +0.1 6,696,402 - -0.9 6,696,594 + -0.3 6,696,594 + -0.3 6,696,594 + +0.9 6,696,594 + -1.0 6,696,594 + +0.3 6,696,594 + -0.9 6,696,594 + -0.4 6,696,595 - -0.6 6,696,595 - +0.1 6,696,596 + +0.5 6,696,596 + -0.1 6,696,619 + +1.0 6,696,638 + -0.1 6,696,638 + +1.0 6,696,638 + +0.1 6,696,639 - +2.1 6,696,639 - -0.5 6,697,533 + Pf6N2E2_5875 0.87 +1.1 6,697,836 + Pf6N2E2_5876 0.41 +0.1 6,697,836 + Pf6N2E2_5876 0.41 -1.0 6,697,900 + Pf6N2E2_5876 0.59 -1.3 6,697,901 - Pf6N2E2_5876 0.59 +1.1 6,697,901 - Pf6N2E2_5876 0.59 -0.9 6,697,901 - Pf6N2E2_5876 0.59 -0.1 6,697,901 - Pf6N2E2_5876 0.59 -1.0 6,698,038 + -0.9 6,698,038 + +0.1 6,698,039 - -1.0 6,698,181 - Pf6N2E2_5877 0.31 +1.1 6,698,181 - Pf6N2E2_5877 0.31 -0.1 6,698,181 - Pf6N2E2_5877 0.31 -0.5 6,698,181 - Pf6N2E2_5877 0.31 +0.1 6,698,181 - Pf6N2E2_5877 0.31 -0.9 6,698,600 + Pf6N2E2_5878 0.13 -1.3 6,698,600 + Pf6N2E2_5878 0.13 +0.2 6,698,601 - Pf6N2E2_5878 0.13 +0.2
Or see this region's nucleotide sequence