Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5765

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5764 and Pf6N2E2_5765 are separated by 82 nucleotidesPf6N2E2_5765 and Pf6N2E2_5766 are separated by 41 nucleotidesPf6N2E2_5766 and Pf6N2E2_5767 are separated by 118 nucleotides Pf6N2E2_5764 - C4-dicarboxylate transporter/malic acid transport protein, at 6,578,632 to 6,579,780 _5764 Pf6N2E2_5765 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 6,579,863 to 6,581,737 _5765 Pf6N2E2_5766 - Quaternary ammonium compound-resistance protein SugE, at 6,581,779 to 6,582,093 _5766 Pf6N2E2_5767 - Sodium-dependent transporter, at 6,582,212 to 6,583,177 _5767 Position (kb) 6579 6580 6581 6582Strain fitness (log2 ratio) -2 -1 0 1 2at 6579.030 kb on - strand, within Pf6N2E2_5764at 6579.235 kb on + strand, within Pf6N2E2_5764at 6579.235 kb on + strand, within Pf6N2E2_5764at 6579.235 kb on + strand, within Pf6N2E2_5764at 6579.235 kb on + strand, within Pf6N2E2_5764at 6579.236 kb on - strand, within Pf6N2E2_5764at 6579.236 kb on - strand, within Pf6N2E2_5764at 6579.236 kb on - strand, within Pf6N2E2_5764at 6579.236 kb on - strand, within Pf6N2E2_5764at 6579.236 kb on - strand, within Pf6N2E2_5764at 6579.236 kb on - strand, within Pf6N2E2_5764at 6579.236 kb on - strand, within Pf6N2E2_5764at 6579.470 kb on + strand, within Pf6N2E2_5764at 6579.471 kb on - strand, within Pf6N2E2_5764at 6579.471 kb on - strand, within Pf6N2E2_5764at 6579.478 kb on - strand, within Pf6N2E2_5764at 6579.478 kb on - strand, within Pf6N2E2_5764at 6579.601 kb on + strand, within Pf6N2E2_5764at 6579.602 kb on - strand, within Pf6N2E2_5764at 6579.714 kb on + strandat 6579.778 kb on + strandat 6579.779 kb on - strandat 6579.795 kb on + strandat 6579.795 kb on + strandat 6579.795 kb on + strandat 6579.795 kb on + strandat 6579.795 kb on + strandat 6579.796 kb on - strandat 6579.796 kb on - strandat 6579.796 kb on - strandat 6579.796 kb on - strandat 6579.796 kb on - strandat 6579.796 kb on - strandat 6579.796 kb on - strandat 6579.831 kb on + strandat 6579.849 kb on + strandat 6579.850 kb on - strandat 6579.850 kb on - strandat 6579.986 kb on + strandat 6579.987 kb on - strandat 6580.045 kb on + strandat 6580.045 kb on + strandat 6580.186 kb on - strand, within Pf6N2E2_5765at 6580.250 kb on + strand, within Pf6N2E2_5765at 6580.250 kb on + strand, within Pf6N2E2_5765at 6580.380 kb on - strand, within Pf6N2E2_5765at 6580.598 kb on + strand, within Pf6N2E2_5765at 6580.598 kb on + strand, within Pf6N2E2_5765at 6580.599 kb on - strand, within Pf6N2E2_5765at 6580.599 kb on - strand, within Pf6N2E2_5765at 6580.599 kb on - strand, within Pf6N2E2_5765at 6580.619 kb on + strand, within Pf6N2E2_5765at 6580.619 kb on + strand, within Pf6N2E2_5765at 6580.619 kb on + strand, within Pf6N2E2_5765at 6580.620 kb on - strand, within Pf6N2E2_5765at 6580.620 kb on - strand, within Pf6N2E2_5765at 6580.620 kb on - strand, within Pf6N2E2_5765at 6580.848 kb on + strand, within Pf6N2E2_5765at 6580.916 kb on + strand, within Pf6N2E2_5765at 6580.916 kb on + strand, within Pf6N2E2_5765at 6580.916 kb on + strand, within Pf6N2E2_5765at 6580.916 kb on + strand, within Pf6N2E2_5765at 6580.931 kb on + strand, within Pf6N2E2_5765at 6581.117 kb on + strand, within Pf6N2E2_5765at 6581.118 kb on - strand, within Pf6N2E2_5765at 6581.118 kb on - strand, within Pf6N2E2_5765at 6581.183 kb on + strand, within Pf6N2E2_5765at 6581.315 kb on + strand, within Pf6N2E2_5765at 6581.315 kb on + strand, within Pf6N2E2_5765at 6581.315 kb on + strand, within Pf6N2E2_5765at 6581.316 kb on - strand, within Pf6N2E2_5765at 6581.316 kb on - strand, within Pf6N2E2_5765at 6581.316 kb on - strand, within Pf6N2E2_5765at 6581.316 kb on - strand, within Pf6N2E2_5765at 6581.318 kb on + strand, within Pf6N2E2_5765at 6581.319 kb on - strand, within Pf6N2E2_5765at 6581.319 kb on - strand, within Pf6N2E2_5765at 6581.319 kb on - strand, within Pf6N2E2_5765at 6581.319 kb on - strand, within Pf6N2E2_5765at 6581.327 kb on + strand, within Pf6N2E2_5765at 6581.328 kb on - strand, within Pf6N2E2_5765at 6581.328 kb on - strand, within Pf6N2E2_5765at 6581.328 kb on - strand, within Pf6N2E2_5765at 6581.328 kb on - strand, within Pf6N2E2_5765at 6581.404 kb on + strand, within Pf6N2E2_5765at 6581.404 kb on + strand, within Pf6N2E2_5765at 6581.404 kb on + strand, within Pf6N2E2_5765at 6581.404 kb on + strand, within Pf6N2E2_5765at 6581.404 kb on + strand, within Pf6N2E2_5765at 6581.404 kb on + strand, within Pf6N2E2_5765at 6581.404 kb on + strand, within Pf6N2E2_5765at 6581.405 kb on - strand, within Pf6N2E2_5765at 6581.405 kb on - strand, within Pf6N2E2_5765at 6581.405 kb on - strand, within Pf6N2E2_5765at 6581.405 kb on - strand, within Pf6N2E2_5765at 6581.405 kb on - strand, within Pf6N2E2_5765at 6581.405 kb on - strand, within Pf6N2E2_5765at 6581.405 kb on - strand, within Pf6N2E2_5765at 6581.405 kb on - strand, within Pf6N2E2_5765at 6581.405 kb on - strand, within Pf6N2E2_5765at 6581.405 kb on - strand, within Pf6N2E2_5765at 6581.405 kb on - strand, within Pf6N2E2_5765at 6581.405 kb on - strand, within Pf6N2E2_5765at 6581.408 kb on + strand, within Pf6N2E2_5765at 6581.409 kb on - strand, within Pf6N2E2_5765at 6581.439 kb on - strand, within Pf6N2E2_5765at 6581.439 kb on - strand, within Pf6N2E2_5765at 6581.735 kb on + strandat 6581.775 kb on + strandat 6581.776 kb on - strandat 6581.776 kb on - strandat 6581.776 kb on - strandat 6581.776 kb on - strandat 6582.030 kb on - strand, within Pf6N2E2_5766at 6582.141 kb on + strandat 6582.236 kb on + strandat 6582.237 kb on - strandat 6582.237 kb on - strandat 6582.274 kb on - strandat 6582.415 kb on + strand, within Pf6N2E2_5767at 6582.416 kb on - strand, within Pf6N2E2_5767at 6582.416 kb on - strand, within Pf6N2E2_5767at 6582.416 kb on - strand, within Pf6N2E2_5767at 6582.416 kb on - strand, within Pf6N2E2_5767at 6582.416 kb on - strand, within Pf6N2E2_5767at 6582.456 kb on + strand, within Pf6N2E2_5767at 6582.457 kb on - strand, within Pf6N2E2_5767at 6582.596 kb on + strand, within Pf6N2E2_5767at 6582.597 kb on - strand, within Pf6N2E2_5767at 6582.597 kb on - strand, within Pf6N2E2_5767at 6582.597 kb on - strand, within Pf6N2E2_5767at 6582.597 kb on - strand, within Pf6N2E2_5767at 6582.597 kb on - strand, within Pf6N2E2_5767at 6582.659 kb on - strand, within Pf6N2E2_5767

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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6,579,030 - Pf6N2E2_5764 0.35 +0.2
6,579,235 + Pf6N2E2_5764 0.52 -0.3
6,579,235 + Pf6N2E2_5764 0.52 +0.5
6,579,235 + Pf6N2E2_5764 0.52 +0.2
6,579,235 + Pf6N2E2_5764 0.52 -0.6
6,579,236 - Pf6N2E2_5764 0.53 +0.5
6,579,236 - Pf6N2E2_5764 0.53 +1.0
6,579,236 - Pf6N2E2_5764 0.53 -1.6
6,579,236 - Pf6N2E2_5764 0.53 +0.2
6,579,236 - Pf6N2E2_5764 0.53 -0.0
6,579,236 - Pf6N2E2_5764 0.53 -0.2
6,579,236 - Pf6N2E2_5764 0.53 +1.7
6,579,470 + Pf6N2E2_5764 0.73 +0.1
6,579,471 - Pf6N2E2_5764 0.73 +0.4
6,579,471 - Pf6N2E2_5764 0.73 -1.2
6,579,478 - Pf6N2E2_5764 0.74 -0.8
6,579,478 - Pf6N2E2_5764 0.74 -0.3
6,579,601 + Pf6N2E2_5764 0.84 +1.6
6,579,602 - Pf6N2E2_5764 0.84 +0.6
6,579,714 + -2.2
6,579,778 + +1.2
6,579,779 - +0.2
6,579,795 + +0.4
6,579,795 + +0.2
6,579,795 + -0.7
6,579,795 + +1.2
6,579,795 + +0.5
6,579,796 - -1.2
6,579,796 - -0.1
6,579,796 - +0.5
6,579,796 - +0.6
6,579,796 - +0.4
6,579,796 - -1.4
6,579,796 - +1.2
6,579,831 + +1.2
6,579,849 + +0.8
6,579,850 - +1.2
6,579,850 - -1.4
6,579,986 + +0.2
6,579,987 - +0.5
6,580,045 + -0.8
6,580,045 + -0.3
6,580,186 - Pf6N2E2_5765 0.17 +0.2
6,580,250 + Pf6N2E2_5765 0.21 -0.1
6,580,250 + Pf6N2E2_5765 0.21 +0.4
6,580,380 - Pf6N2E2_5765 0.28 +0.7
6,580,598 + Pf6N2E2_5765 0.39 +0.7
6,580,598 + Pf6N2E2_5765 0.39 -0.0
6,580,599 - Pf6N2E2_5765 0.39 -2.1
6,580,599 - Pf6N2E2_5765 0.39 -1.4
6,580,599 - Pf6N2E2_5765 0.39 -0.2
6,580,619 + Pf6N2E2_5765 0.40 -0.2
6,580,619 + Pf6N2E2_5765 0.40 +0.7
6,580,619 + Pf6N2E2_5765 0.40 +0.7
6,580,620 - Pf6N2E2_5765 0.40 -1.3
6,580,620 - Pf6N2E2_5765 0.40 +1.3
6,580,620 - Pf6N2E2_5765 0.40 +0.6
6,580,848 + Pf6N2E2_5765 0.53 +0.6
6,580,916 + Pf6N2E2_5765 0.56 -0.2
6,580,916 + Pf6N2E2_5765 0.56 +0.2
6,580,916 + Pf6N2E2_5765 0.56 +0.2
6,580,916 + Pf6N2E2_5765 0.56 +1.7
6,580,931 + Pf6N2E2_5765 0.57 -0.9
6,581,117 + Pf6N2E2_5765 0.67 -0.1
6,581,118 - Pf6N2E2_5765 0.67 -0.8
6,581,118 - Pf6N2E2_5765 0.67 +0.2
6,581,183 + Pf6N2E2_5765 0.70 -0.4
6,581,315 + Pf6N2E2_5765 0.77 -0.8
6,581,315 + Pf6N2E2_5765 0.77 -0.8
6,581,315 + Pf6N2E2_5765 0.77 -0.4
6,581,316 - Pf6N2E2_5765 0.77 +0.6
6,581,316 - Pf6N2E2_5765 0.77 +0.6
6,581,316 - Pf6N2E2_5765 0.77 +0.5
6,581,316 - Pf6N2E2_5765 0.77 +0.8
6,581,318 + Pf6N2E2_5765 0.78 -0.5
6,581,319 - Pf6N2E2_5765 0.78 +0.4
6,581,319 - Pf6N2E2_5765 0.78 -0.1
6,581,319 - Pf6N2E2_5765 0.78 +0.8
6,581,319 - Pf6N2E2_5765 0.78 +0.2
6,581,327 + Pf6N2E2_5765 0.78 -0.2
6,581,328 - Pf6N2E2_5765 0.78 +0.5
6,581,328 - Pf6N2E2_5765 0.78 -2.2
6,581,328 - Pf6N2E2_5765 0.78 -1.4
6,581,328 - Pf6N2E2_5765 0.78 +0.1
6,581,404 + Pf6N2E2_5765 0.82 +0.6
6,581,404 + Pf6N2E2_5765 0.82 +2.2
6,581,404 + Pf6N2E2_5765 0.82 -0.5
6,581,404 + Pf6N2E2_5765 0.82 -1.3
6,581,404 + Pf6N2E2_5765 0.82 +1.2
6,581,404 + Pf6N2E2_5765 0.82 -0.2
6,581,404 + Pf6N2E2_5765 0.82 -0.8
6,581,405 - Pf6N2E2_5765 0.82 -0.0
6,581,405 - Pf6N2E2_5765 0.82 +0.4
6,581,405 - Pf6N2E2_5765 0.82 +0.8
6,581,405 - Pf6N2E2_5765 0.82 +1.7
6,581,405 - Pf6N2E2_5765 0.82 +0.5
6,581,405 - Pf6N2E2_5765 0.82 -0.4
6,581,405 - Pf6N2E2_5765 0.82 +1.2
6,581,405 - Pf6N2E2_5765 0.82 +0.3
6,581,405 - Pf6N2E2_5765 0.82 -1.2
6,581,405 - Pf6N2E2_5765 0.82 -0.7
6,581,405 - Pf6N2E2_5765 0.82 -0.6
6,581,405 - Pf6N2E2_5765 0.82 -0.2
6,581,408 + Pf6N2E2_5765 0.82 +0.8
6,581,409 - Pf6N2E2_5765 0.82 +0.2
6,581,439 - Pf6N2E2_5765 0.84 +1.4
6,581,439 - Pf6N2E2_5765 0.84 -1.0
6,581,735 + +1.7
6,581,775 + -1.2
6,581,776 - -0.0
6,581,776 - -1.2
6,581,776 - -0.4
6,581,776 - -0.4
6,582,030 - Pf6N2E2_5766 0.80 +0.2
6,582,141 + +0.4
6,582,236 + +1.0
6,582,237 - -0.5
6,582,237 - -1.0
6,582,274 - +0.0
6,582,415 + Pf6N2E2_5767 0.21 -0.8
6,582,416 - Pf6N2E2_5767 0.21 -1.3
6,582,416 - Pf6N2E2_5767 0.21 -1.3
6,582,416 - Pf6N2E2_5767 0.21 -0.3
6,582,416 - Pf6N2E2_5767 0.21 +1.4
6,582,416 - Pf6N2E2_5767 0.21 -0.1
6,582,456 + Pf6N2E2_5767 0.25 +0.2
6,582,457 - Pf6N2E2_5767 0.25 -0.2
6,582,596 + Pf6N2E2_5767 0.40 +0.4
6,582,597 - Pf6N2E2_5767 0.40 -0.4
6,582,597 - Pf6N2E2_5767 0.40 -1.3
6,582,597 - Pf6N2E2_5767 0.40 -0.2
6,582,597 - Pf6N2E2_5767 0.40 +1.6
6,582,597 - Pf6N2E2_5767 0.40 +0.2
6,582,659 - Pf6N2E2_5767 0.46 +0.3

Or see this region's nucleotide sequence