Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5700 and Pf6N2E2_5701 are separated by 26 nucleotides Pf6N2E2_5701 and Pf6N2E2_5702 are separated by 11 nucleotides Pf6N2E2_5702 and Pf6N2E2_5703 are separated by 147 nucleotides
Pf6N2E2_5700 - Sensor histidine kinase, at 6,515,488 to 6,517,098
_5700
Pf6N2E2_5701 - 4'-phosphopantetheinyl transferase entD (EC 2.7.8.-); Holo-[acyl-carrier protein] synthase, alternative (EC 2.7.8.7), at 6,517,125 to 6,518,060
_5701
Pf6N2E2_5702 - Dienelactone hydrolase family, at 6,518,072 to 6,518,863
_5702
Pf6N2E2_5703 - outer membrane protein H1, at 6,519,011 to 6,519,610
_5703
Position (kb)
6517
6518
6519 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6516.160 kb on + strand, within Pf6N2E2_5700 at 6516.161 kb on - strand, within Pf6N2E2_5700 at 6516.161 kb on - strand, within Pf6N2E2_5700 at 6516.238 kb on + strand, within Pf6N2E2_5700 at 6516.238 kb on + strand, within Pf6N2E2_5700 at 6516.238 kb on + strand, within Pf6N2E2_5700 at 6516.523 kb on + strand, within Pf6N2E2_5700 at 6516.523 kb on + strand, within Pf6N2E2_5700 at 6516.523 kb on + strand, within Pf6N2E2_5700 at 6516.523 kb on + strand, within Pf6N2E2_5700 at 6516.523 kb on + strand, within Pf6N2E2_5700 at 6516.523 kb on + strand, within Pf6N2E2_5700 at 6516.524 kb on - strand, within Pf6N2E2_5700 at 6516.524 kb on - strand, within Pf6N2E2_5700 at 6516.524 kb on - strand, within Pf6N2E2_5700 at 6516.586 kb on + strand, within Pf6N2E2_5700 at 6516.586 kb on + strand, within Pf6N2E2_5700 at 6516.586 kb on + strand, within Pf6N2E2_5700 at 6516.587 kb on - strand, within Pf6N2E2_5700 at 6516.587 kb on - strand, within Pf6N2E2_5700 at 6516.587 kb on - strand, within Pf6N2E2_5700 at 6516.587 kb on - strand, within Pf6N2E2_5700 at 6516.587 kb on - strand, within Pf6N2E2_5700 at 6516.710 kb on + strand, within Pf6N2E2_5700 at 6516.710 kb on + strand, within Pf6N2E2_5700 at 6516.710 kb on + strand, within Pf6N2E2_5700 at 6516.710 kb on + strand, within Pf6N2E2_5700 at 6516.710 kb on + strand, within Pf6N2E2_5700 at 6516.710 kb on + strand, within Pf6N2E2_5700 at 6516.711 kb on - strand, within Pf6N2E2_5700 at 6516.711 kb on - strand, within Pf6N2E2_5700 at 6516.711 kb on - strand, within Pf6N2E2_5700 at 6516.836 kb on - strand, within Pf6N2E2_5700 at 6517.099 kb on + strand at 6517.099 kb on + strand at 6517.099 kb on + strand at 6517.100 kb on - strand at 6517.100 kb on - strand at 6517.993 kb on - strand at 6518.104 kb on + strand at 6518.139 kb on + strand at 6518.139 kb on + strand at 6518.140 kb on - strand at 6518.234 kb on - strand, within Pf6N2E2_5702 at 6518.234 kb on - strand, within Pf6N2E2_5702 at 6518.234 kb on - strand, within Pf6N2E2_5702 at 6518.236 kb on - strand, within Pf6N2E2_5702 at 6518.430 kb on - strand, within Pf6N2E2_5702 at 6518.501 kb on + strand, within Pf6N2E2_5702 at 6518.502 kb on - strand, within Pf6N2E2_5702 at 6518.610 kb on + strand, within Pf6N2E2_5702 at 6518.610 kb on + strand, within Pf6N2E2_5702 at 6518.610 kb on + strand, within Pf6N2E2_5702 at 6518.610 kb on + strand, within Pf6N2E2_5702 at 6518.610 kb on + strand, within Pf6N2E2_5702 at 6518.610 kb on + strand, within Pf6N2E2_5702 at 6518.610 kb on + strand, within Pf6N2E2_5702 at 6518.611 kb on - strand, within Pf6N2E2_5702 at 6518.611 kb on - strand, within Pf6N2E2_5702 at 6518.611 kb on - strand, within Pf6N2E2_5702 at 6518.635 kb on - strand, within Pf6N2E2_5702 at 6518.635 kb on - strand, within Pf6N2E2_5702 at 6518.674 kb on - strand, within Pf6N2E2_5702 at 6518.742 kb on + strand, within Pf6N2E2_5702 at 6518.742 kb on + strand, within Pf6N2E2_5702 at 6518.748 kb on + strand, within Pf6N2E2_5702 at 6518.748 kb on + strand, within Pf6N2E2_5702 at 6518.748 kb on + strand, within Pf6N2E2_5702 at 6518.748 kb on + strand, within Pf6N2E2_5702 at 6518.749 kb on - strand, within Pf6N2E2_5702 at 6518.749 kb on - strand, within Pf6N2E2_5702 at 6518.751 kb on + strand, within Pf6N2E2_5702 at 6518.784 kb on + strand at 6518.840 kb on + strand at 6518.840 kb on + strand at 6518.841 kb on - strand at 6518.841 kb on - strand at 6518.841 kb on - strand at 6518.841 kb on - strand at 6518.841 kb on - strand at 6518.902 kb on - strand at 6518.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 6,516,160 + Pf6N2E2_5700 0.42 +1.0 6,516,161 - Pf6N2E2_5700 0.42 -0.6 6,516,161 - Pf6N2E2_5700 0.42 -2.1 6,516,238 + Pf6N2E2_5700 0.47 +0.8 6,516,238 + Pf6N2E2_5700 0.47 +0.6 6,516,238 + Pf6N2E2_5700 0.47 +1.6 6,516,523 + Pf6N2E2_5700 0.64 +0.1 6,516,523 + Pf6N2E2_5700 0.64 +0.7 6,516,523 + Pf6N2E2_5700 0.64 +0.6 6,516,523 + Pf6N2E2_5700 0.64 -2.1 6,516,523 + Pf6N2E2_5700 0.64 -0.4 6,516,523 + Pf6N2E2_5700 0.64 +0.6 6,516,524 - Pf6N2E2_5700 0.64 +0.9 6,516,524 - Pf6N2E2_5700 0.64 -0.8 6,516,524 - Pf6N2E2_5700 0.64 +1.2 6,516,586 + Pf6N2E2_5700 0.68 -0.4 6,516,586 + Pf6N2E2_5700 0.68 -0.9 6,516,586 + Pf6N2E2_5700 0.68 -0.4 6,516,587 - Pf6N2E2_5700 0.68 +0.9 6,516,587 - Pf6N2E2_5700 0.68 +0.2 6,516,587 - Pf6N2E2_5700 0.68 +0.6 6,516,587 - Pf6N2E2_5700 0.68 -1.6 6,516,587 - Pf6N2E2_5700 0.68 +0.5 6,516,710 + Pf6N2E2_5700 0.76 +0.9 6,516,710 + Pf6N2E2_5700 0.76 +1.8 6,516,710 + Pf6N2E2_5700 0.76 -0.7 6,516,710 + Pf6N2E2_5700 0.76 -1.8 6,516,710 + Pf6N2E2_5700 0.76 +0.6 6,516,710 + Pf6N2E2_5700 0.76 +0.6 6,516,711 - Pf6N2E2_5700 0.76 +0.7 6,516,711 - Pf6N2E2_5700 0.76 -1.1 6,516,711 - Pf6N2E2_5700 0.76 -0.6 6,516,836 - Pf6N2E2_5700 0.84 +0.2 6,517,099 + -0.1 6,517,099 + -0.2 6,517,099 + -0.5 6,517,100 - +0.7 6,517,100 - -1.6 6,517,993 - -0.5 6,518,104 + +0.5 6,518,139 + +0.7 6,518,139 + -0.4 6,518,140 - +0.4 6,518,234 - Pf6N2E2_5702 0.20 -0.4 6,518,234 - Pf6N2E2_5702 0.20 -1.8 6,518,234 - Pf6N2E2_5702 0.20 -0.0 6,518,236 - Pf6N2E2_5702 0.21 +1.2 6,518,430 - Pf6N2E2_5702 0.45 -0.2 6,518,501 + Pf6N2E2_5702 0.54 +0.2 6,518,502 - Pf6N2E2_5702 0.54 +0.2 6,518,610 + Pf6N2E2_5702 0.68 -1.1 6,518,610 + Pf6N2E2_5702 0.68 +0.2 6,518,610 + Pf6N2E2_5702 0.68 +0.5 6,518,610 + Pf6N2E2_5702 0.68 -0.8 6,518,610 + Pf6N2E2_5702 0.68 +1.9 6,518,610 + Pf6N2E2_5702 0.68 +0.7 6,518,610 + Pf6N2E2_5702 0.68 -0.0 6,518,611 - Pf6N2E2_5702 0.68 -0.1 6,518,611 - Pf6N2E2_5702 0.68 +0.2 6,518,611 - Pf6N2E2_5702 0.68 +0.5 6,518,635 - Pf6N2E2_5702 0.71 +1.1 6,518,635 - Pf6N2E2_5702 0.71 +0.2 6,518,674 - Pf6N2E2_5702 0.76 -0.5 6,518,742 + Pf6N2E2_5702 0.85 +0.0 6,518,742 + Pf6N2E2_5702 0.85 -1.4 6,518,748 + Pf6N2E2_5702 0.85 -0.7 6,518,748 + Pf6N2E2_5702 0.85 -1.4 6,518,748 + Pf6N2E2_5702 0.85 -0.6 6,518,748 + Pf6N2E2_5702 0.85 +0.4 6,518,749 - Pf6N2E2_5702 0.85 +0.3 6,518,749 - Pf6N2E2_5702 0.85 -0.4 6,518,751 + Pf6N2E2_5702 0.86 +0.7 6,518,784 + -1.1 6,518,840 + -1.1 6,518,840 + -0.4 6,518,841 - +1.2 6,518,841 - -0.5 6,518,841 - +1.9 6,518,841 - -1.8 6,518,841 - -0.1 6,518,902 - +0.8 6,518,902 - -0.5
Or see this region's nucleotide sequence