Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5701

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5700 and Pf6N2E2_5701 are separated by 26 nucleotidesPf6N2E2_5701 and Pf6N2E2_5702 are separated by 11 nucleotidesPf6N2E2_5702 and Pf6N2E2_5703 are separated by 147 nucleotides Pf6N2E2_5700 - Sensor histidine kinase, at 6,515,488 to 6,517,098 _5700 Pf6N2E2_5701 - 4'-phosphopantetheinyl transferase entD (EC 2.7.8.-); Holo-[acyl-carrier protein] synthase, alternative (EC 2.7.8.7), at 6,517,125 to 6,518,060 _5701 Pf6N2E2_5702 - Dienelactone hydrolase family, at 6,518,072 to 6,518,863 _5702 Pf6N2E2_5703 - outer membrane protein H1, at 6,519,011 to 6,519,610 _5703 Position (kb) 6517 6518 6519Strain fitness (log2 ratio) -2 -1 0 1 2at 6516.160 kb on + strand, within Pf6N2E2_5700at 6516.161 kb on - strand, within Pf6N2E2_5700at 6516.161 kb on - strand, within Pf6N2E2_5700at 6516.238 kb on + strand, within Pf6N2E2_5700at 6516.238 kb on + strand, within Pf6N2E2_5700at 6516.238 kb on + strand, within Pf6N2E2_5700at 6516.523 kb on + strand, within Pf6N2E2_5700at 6516.523 kb on + strand, within Pf6N2E2_5700at 6516.523 kb on + strand, within Pf6N2E2_5700at 6516.523 kb on + strand, within Pf6N2E2_5700at 6516.523 kb on + strand, within Pf6N2E2_5700at 6516.523 kb on + strand, within Pf6N2E2_5700at 6516.524 kb on - strand, within Pf6N2E2_5700at 6516.524 kb on - strand, within Pf6N2E2_5700at 6516.524 kb on - strand, within Pf6N2E2_5700at 6516.586 kb on + strand, within Pf6N2E2_5700at 6516.586 kb on + strand, within Pf6N2E2_5700at 6516.586 kb on + strand, within Pf6N2E2_5700at 6516.587 kb on - strand, within Pf6N2E2_5700at 6516.587 kb on - strand, within Pf6N2E2_5700at 6516.587 kb on - strand, within Pf6N2E2_5700at 6516.587 kb on - strand, within Pf6N2E2_5700at 6516.587 kb on - strand, within Pf6N2E2_5700at 6516.710 kb on + strand, within Pf6N2E2_5700at 6516.710 kb on + strand, within Pf6N2E2_5700at 6516.710 kb on + strand, within Pf6N2E2_5700at 6516.710 kb on + strand, within Pf6N2E2_5700at 6516.710 kb on + strand, within Pf6N2E2_5700at 6516.710 kb on + strand, within Pf6N2E2_5700at 6516.711 kb on - strand, within Pf6N2E2_5700at 6516.711 kb on - strand, within Pf6N2E2_5700at 6516.711 kb on - strand, within Pf6N2E2_5700at 6516.836 kb on - strand, within Pf6N2E2_5700at 6517.099 kb on + strandat 6517.099 kb on + strandat 6517.099 kb on + strandat 6517.100 kb on - strandat 6517.100 kb on - strandat 6517.993 kb on - strandat 6518.104 kb on + strandat 6518.139 kb on + strandat 6518.139 kb on + strandat 6518.140 kb on - strandat 6518.234 kb on - strand, within Pf6N2E2_5702at 6518.234 kb on - strand, within Pf6N2E2_5702at 6518.234 kb on - strand, within Pf6N2E2_5702at 6518.236 kb on - strand, within Pf6N2E2_5702at 6518.430 kb on - strand, within Pf6N2E2_5702at 6518.501 kb on + strand, within Pf6N2E2_5702at 6518.502 kb on - strand, within Pf6N2E2_5702at 6518.610 kb on + strand, within Pf6N2E2_5702at 6518.610 kb on + strand, within Pf6N2E2_5702at 6518.610 kb on + strand, within Pf6N2E2_5702at 6518.610 kb on + strand, within Pf6N2E2_5702at 6518.610 kb on + strand, within Pf6N2E2_5702at 6518.610 kb on + strand, within Pf6N2E2_5702at 6518.610 kb on + strand, within Pf6N2E2_5702at 6518.611 kb on - strand, within Pf6N2E2_5702at 6518.611 kb on - strand, within Pf6N2E2_5702at 6518.611 kb on - strand, within Pf6N2E2_5702at 6518.635 kb on - strand, within Pf6N2E2_5702at 6518.635 kb on - strand, within Pf6N2E2_5702at 6518.674 kb on - strand, within Pf6N2E2_5702at 6518.742 kb on + strand, within Pf6N2E2_5702at 6518.742 kb on + strand, within Pf6N2E2_5702at 6518.748 kb on + strand, within Pf6N2E2_5702at 6518.748 kb on + strand, within Pf6N2E2_5702at 6518.748 kb on + strand, within Pf6N2E2_5702at 6518.748 kb on + strand, within Pf6N2E2_5702at 6518.749 kb on - strand, within Pf6N2E2_5702at 6518.749 kb on - strand, within Pf6N2E2_5702at 6518.751 kb on + strand, within Pf6N2E2_5702at 6518.784 kb on + strandat 6518.840 kb on + strandat 6518.840 kb on + strandat 6518.841 kb on - strandat 6518.841 kb on - strandat 6518.841 kb on - strandat 6518.841 kb on - strandat 6518.841 kb on - strandat 6518.902 kb on - strandat 6518.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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6,516,160 + Pf6N2E2_5700 0.42 +1.0
6,516,161 - Pf6N2E2_5700 0.42 -0.6
6,516,161 - Pf6N2E2_5700 0.42 -2.1
6,516,238 + Pf6N2E2_5700 0.47 +0.8
6,516,238 + Pf6N2E2_5700 0.47 +0.6
6,516,238 + Pf6N2E2_5700 0.47 +1.6
6,516,523 + Pf6N2E2_5700 0.64 +0.1
6,516,523 + Pf6N2E2_5700 0.64 +0.7
6,516,523 + Pf6N2E2_5700 0.64 +0.6
6,516,523 + Pf6N2E2_5700 0.64 -2.1
6,516,523 + Pf6N2E2_5700 0.64 -0.4
6,516,523 + Pf6N2E2_5700 0.64 +0.6
6,516,524 - Pf6N2E2_5700 0.64 +0.9
6,516,524 - Pf6N2E2_5700 0.64 -0.8
6,516,524 - Pf6N2E2_5700 0.64 +1.2
6,516,586 + Pf6N2E2_5700 0.68 -0.4
6,516,586 + Pf6N2E2_5700 0.68 -0.9
6,516,586 + Pf6N2E2_5700 0.68 -0.4
6,516,587 - Pf6N2E2_5700 0.68 +0.9
6,516,587 - Pf6N2E2_5700 0.68 +0.2
6,516,587 - Pf6N2E2_5700 0.68 +0.6
6,516,587 - Pf6N2E2_5700 0.68 -1.6
6,516,587 - Pf6N2E2_5700 0.68 +0.5
6,516,710 + Pf6N2E2_5700 0.76 +0.9
6,516,710 + Pf6N2E2_5700 0.76 +1.8
6,516,710 + Pf6N2E2_5700 0.76 -0.7
6,516,710 + Pf6N2E2_5700 0.76 -1.8
6,516,710 + Pf6N2E2_5700 0.76 +0.6
6,516,710 + Pf6N2E2_5700 0.76 +0.6
6,516,711 - Pf6N2E2_5700 0.76 +0.7
6,516,711 - Pf6N2E2_5700 0.76 -1.1
6,516,711 - Pf6N2E2_5700 0.76 -0.6
6,516,836 - Pf6N2E2_5700 0.84 +0.2
6,517,099 + -0.1
6,517,099 + -0.2
6,517,099 + -0.5
6,517,100 - +0.7
6,517,100 - -1.6
6,517,993 - -0.5
6,518,104 + +0.5
6,518,139 + +0.7
6,518,139 + -0.4
6,518,140 - +0.4
6,518,234 - Pf6N2E2_5702 0.20 -0.4
6,518,234 - Pf6N2E2_5702 0.20 -1.8
6,518,234 - Pf6N2E2_5702 0.20 -0.0
6,518,236 - Pf6N2E2_5702 0.21 +1.2
6,518,430 - Pf6N2E2_5702 0.45 -0.2
6,518,501 + Pf6N2E2_5702 0.54 +0.2
6,518,502 - Pf6N2E2_5702 0.54 +0.2
6,518,610 + Pf6N2E2_5702 0.68 -1.1
6,518,610 + Pf6N2E2_5702 0.68 +0.2
6,518,610 + Pf6N2E2_5702 0.68 +0.5
6,518,610 + Pf6N2E2_5702 0.68 -0.8
6,518,610 + Pf6N2E2_5702 0.68 +1.9
6,518,610 + Pf6N2E2_5702 0.68 +0.7
6,518,610 + Pf6N2E2_5702 0.68 -0.0
6,518,611 - Pf6N2E2_5702 0.68 -0.1
6,518,611 - Pf6N2E2_5702 0.68 +0.2
6,518,611 - Pf6N2E2_5702 0.68 +0.5
6,518,635 - Pf6N2E2_5702 0.71 +1.1
6,518,635 - Pf6N2E2_5702 0.71 +0.2
6,518,674 - Pf6N2E2_5702 0.76 -0.5
6,518,742 + Pf6N2E2_5702 0.85 +0.0
6,518,742 + Pf6N2E2_5702 0.85 -1.4
6,518,748 + Pf6N2E2_5702 0.85 -0.7
6,518,748 + Pf6N2E2_5702 0.85 -1.4
6,518,748 + Pf6N2E2_5702 0.85 -0.6
6,518,748 + Pf6N2E2_5702 0.85 +0.4
6,518,749 - Pf6N2E2_5702 0.85 +0.3
6,518,749 - Pf6N2E2_5702 0.85 -0.4
6,518,751 + Pf6N2E2_5702 0.86 +0.7
6,518,784 + -1.1
6,518,840 + -1.1
6,518,840 + -0.4
6,518,841 - +1.2
6,518,841 - -0.5
6,518,841 - +1.9
6,518,841 - -1.8
6,518,841 - -0.1
6,518,902 - +0.8
6,518,902 - -0.5

Or see this region's nucleotide sequence