Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5675

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5674 and Pf6N2E2_5675 are separated by 146 nucleotidesPf6N2E2_5675 and Pf6N2E2_5676 are separated by 91 nucleotides Pf6N2E2_5674 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 6,486,178 to 6,487,182 _5674 Pf6N2E2_5675 - Alanyl-tRNA synthetase (EC 6.1.1.7), at 6,487,329 to 6,489,950 _5675 Pf6N2E2_5676 - Aspartokinase (EC 2.7.2.4), at 6,490,042 to 6,491,283 _5676 Position (kb) 6487 6488 6489 6490Strain fitness (log2 ratio) -2 -1 0 1 2at 6486.366 kb on + strand, within Pf6N2E2_5674at 6486.367 kb on - strand, within Pf6N2E2_5674at 6486.409 kb on + strand, within Pf6N2E2_5674at 6486.409 kb on + strand, within Pf6N2E2_5674at 6486.410 kb on - strand, within Pf6N2E2_5674at 6486.410 kb on - strand, within Pf6N2E2_5674at 6486.410 kb on - strand, within Pf6N2E2_5674at 6486.410 kb on - strand, within Pf6N2E2_5674at 6486.410 kb on - strand, within Pf6N2E2_5674at 6486.410 kb on - strand, within Pf6N2E2_5674at 6486.436 kb on + strand, within Pf6N2E2_5674at 6486.436 kb on + strand, within Pf6N2E2_5674at 6486.436 kb on + strand, within Pf6N2E2_5674at 6486.437 kb on - strand, within Pf6N2E2_5674at 6486.437 kb on - strand, within Pf6N2E2_5674at 6486.437 kb on - strand, within Pf6N2E2_5674at 6486.442 kb on + strand, within Pf6N2E2_5674at 6486.442 kb on + strand, within Pf6N2E2_5674at 6486.442 kb on + strand, within Pf6N2E2_5674at 6486.442 kb on + strand, within Pf6N2E2_5674at 6486.442 kb on + strand, within Pf6N2E2_5674at 6486.443 kb on - strand, within Pf6N2E2_5674at 6486.443 kb on - strand, within Pf6N2E2_5674at 6486.443 kb on - strand, within Pf6N2E2_5674at 6486.443 kb on - strand, within Pf6N2E2_5674at 6486.443 kb on - strand, within Pf6N2E2_5674at 6486.625 kb on + strand, within Pf6N2E2_5674at 6486.625 kb on + strand, within Pf6N2E2_5674at 6486.626 kb on - strand, within Pf6N2E2_5674at 6486.626 kb on - strand, within Pf6N2E2_5674at 6486.626 kb on - strand, within Pf6N2E2_5674at 6486.695 kb on - strand, within Pf6N2E2_5674at 6486.901 kb on + strand, within Pf6N2E2_5674at 6486.901 kb on + strand, within Pf6N2E2_5674at 6486.901 kb on + strand, within Pf6N2E2_5674at 6486.902 kb on - strand, within Pf6N2E2_5674at 6486.986 kb on - strand, within Pf6N2E2_5674at 6487.018 kb on + strand, within Pf6N2E2_5674at 6487.018 kb on + strand, within Pf6N2E2_5674at 6487.019 kb on - strand, within Pf6N2E2_5674at 6487.019 kb on - strand, within Pf6N2E2_5674at 6487.211 kb on + strandat 6487.249 kb on + strandat 6487.251 kb on + strandat 6487.251 kb on + strandat 6489.934 kb on + strandat 6489.944 kb on + strandat 6489.948 kb on + strandat 6489.948 kb on + strandat 6489.974 kb on + strandat 6490.006 kb on + strandat 6490.006 kb on + strandat 6490.767 kb on + strand, within Pf6N2E2_5676at 6490.767 kb on + strand, within Pf6N2E2_5676at 6490.767 kb on + strand, within Pf6N2E2_5676at 6490.767 kb on + strand, within Pf6N2E2_5676at 6490.767 kb on + strand, within Pf6N2E2_5676at 6490.770 kb on + strand, within Pf6N2E2_5676

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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6,486,366 + Pf6N2E2_5674 0.19 +0.4
6,486,367 - Pf6N2E2_5674 0.19 +0.8
6,486,409 + Pf6N2E2_5674 0.23 +0.4
6,486,409 + Pf6N2E2_5674 0.23 -0.4
6,486,410 - Pf6N2E2_5674 0.23 +0.9
6,486,410 - Pf6N2E2_5674 0.23 -0.9
6,486,410 - Pf6N2E2_5674 0.23 -2.6
6,486,410 - Pf6N2E2_5674 0.23 -1.3
6,486,410 - Pf6N2E2_5674 0.23 +1.2
6,486,410 - Pf6N2E2_5674 0.23 -0.5
6,486,436 + Pf6N2E2_5674 0.26 -0.7
6,486,436 + Pf6N2E2_5674 0.26 -0.0
6,486,436 + Pf6N2E2_5674 0.26 -1.1
6,486,437 - Pf6N2E2_5674 0.26 +2.0
6,486,437 - Pf6N2E2_5674 0.26 -0.5
6,486,437 - Pf6N2E2_5674 0.26 +0.3
6,486,442 + Pf6N2E2_5674 0.26 -2.2
6,486,442 + Pf6N2E2_5674 0.26 -0.8
6,486,442 + Pf6N2E2_5674 0.26 -0.5
6,486,442 + Pf6N2E2_5674 0.26 -0.0
6,486,442 + Pf6N2E2_5674 0.26 +0.0
6,486,443 - Pf6N2E2_5674 0.26 +0.1
6,486,443 - Pf6N2E2_5674 0.26 +0.2
6,486,443 - Pf6N2E2_5674 0.26 +0.5
6,486,443 - Pf6N2E2_5674 0.26 -0.8
6,486,443 - Pf6N2E2_5674 0.26 +2.0
6,486,625 + Pf6N2E2_5674 0.44 +0.2
6,486,625 + Pf6N2E2_5674 0.44 -1.4
6,486,626 - Pf6N2E2_5674 0.45 -0.0
6,486,626 - Pf6N2E2_5674 0.45 -0.8
6,486,626 - Pf6N2E2_5674 0.45 -0.1
6,486,695 - Pf6N2E2_5674 0.51 -0.3
6,486,901 + Pf6N2E2_5674 0.72 -0.8
6,486,901 + Pf6N2E2_5674 0.72 +0.2
6,486,901 + Pf6N2E2_5674 0.72 -2.7
6,486,902 - Pf6N2E2_5674 0.72 +0.2
6,486,986 - Pf6N2E2_5674 0.80 -0.5
6,487,018 + Pf6N2E2_5674 0.84 -0.8
6,487,018 + Pf6N2E2_5674 0.84 -0.6
6,487,019 - Pf6N2E2_5674 0.84 +1.0
6,487,019 - Pf6N2E2_5674 0.84 -0.8
6,487,211 + -0.2
6,487,249 + +0.9
6,487,251 + +0.5
6,487,251 + -0.8
6,489,934 + -2.6
6,489,944 + -0.9
6,489,948 + -0.6
6,489,948 + -0.5
6,489,974 + +1.3
6,490,006 + +0.1
6,490,006 + -0.8
6,490,767 + Pf6N2E2_5676 0.58 -1.2
6,490,767 + Pf6N2E2_5676 0.58 -1.9
6,490,767 + Pf6N2E2_5676 0.58 -0.8
6,490,767 + Pf6N2E2_5676 0.58 -0.4
6,490,767 + Pf6N2E2_5676 0.58 -0.9
6,490,770 + Pf6N2E2_5676 0.59 -0.2

Or see this region's nucleotide sequence