Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5541

Experiment: Cobalt chloride 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_5539 and Pf6N2E2_5540 are separated by 14 nucleotidesPf6N2E2_5540 and Pf6N2E2_5541 overlap by 1 nucleotidesPf6N2E2_5541 and Pf6N2E2_5542 are separated by 17 nucleotides Pf6N2E2_5539 - MotA/TolQ/ExbB proton channel family protein, at 6,354,765 to 6,355,460 _5539 Pf6N2E2_5540 - Tol biopolymer transport system, TolR protein, at 6,355,475 to 6,355,936 _5540 Pf6N2E2_5541 - TolA protein, at 6,355,936 to 6,357,012 _5541 Pf6N2E2_5542 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 6,357,030 to 6,358,310 _5542 Position (kb) 6355 6356 6357 6358Strain fitness (log2 ratio) -1 0 1at 6355.436 kb on + strandat 6355.436 kb on + strandat 6355.458 kb on + strandat 6355.458 kb on + strandat 6355.458 kb on + strandat 6355.972 kb on + strandat 6355.972 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
remove
6,355,436 + +1.2
6,355,436 + +1.2
6,355,458 + +0.5
6,355,458 + -0.8
6,355,458 + -1.3
6,355,972 + -1.0
6,355,972 + -0.1

Or see this region's nucleotide sequence