Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5501 and Pf6N2E2_5502 overlap by 4 nucleotides Pf6N2E2_5502 and Pf6N2E2_5503 overlap by 14 nucleotides Pf6N2E2_5503 and Pf6N2E2_5504 overlap by 4 nucleotides
Pf6N2E2_5501 - FIG00955538: hypothetical protein, at 6,318,789 to 6,319,952
_5501
Pf6N2E2_5502 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 6,319,949 to 6,321,493
_5502
Pf6N2E2_5503 - FIG01248689: hypothetical protein, at 6,321,480 to 6,322,454
_5503
Pf6N2E2_5504 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 6,322,451 to 6,323,176
_5504
Position (kb)
6319
6320
6321
6322 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 6319.015 kb on + strand, within Pf6N2E2_5501 at 6319.015 kb on + strand, within Pf6N2E2_5501 at 6319.183 kb on + strand, within Pf6N2E2_5501 at 6319.184 kb on - strand, within Pf6N2E2_5501 at 6319.258 kb on + strand, within Pf6N2E2_5501 at 6319.282 kb on + strand, within Pf6N2E2_5501 at 6319.282 kb on + strand, within Pf6N2E2_5501 at 6319.282 kb on + strand, within Pf6N2E2_5501 at 6319.447 kb on + strand, within Pf6N2E2_5501 at 6319.447 kb on + strand, within Pf6N2E2_5501 at 6319.447 kb on + strand, within Pf6N2E2_5501 at 6319.447 kb on + strand, within Pf6N2E2_5501 at 6319.448 kb on - strand, within Pf6N2E2_5501 at 6319.448 kb on - strand, within Pf6N2E2_5501 at 6319.448 kb on - strand, within Pf6N2E2_5501 at 6319.448 kb on - strand, within Pf6N2E2_5501 at 6319.448 kb on - strand, within Pf6N2E2_5501 at 6319.448 kb on - strand, within Pf6N2E2_5501 at 6319.474 kb on + strand, within Pf6N2E2_5501 at 6319.474 kb on + strand, within Pf6N2E2_5501 at 6319.810 kb on + strand, within Pf6N2E2_5501 at 6319.810 kb on + strand, within Pf6N2E2_5501 at 6319.810 kb on + strand, within Pf6N2E2_5501 at 6319.861 kb on + strand at 6319.861 kb on + strand at 6319.862 kb on - strand at 6319.879 kb on + strand at 6319.880 kb on - strand at 6319.880 kb on - strand at 6319.885 kb on + strand at 6319.885 kb on + strand at 6319.886 kb on - strand at 6319.886 kb on - strand at 6320.034 kb on + strand at 6320.818 kb on - strand, within Pf6N2E2_5502 at 6320.841 kb on + strand, within Pf6N2E2_5502 at 6320.841 kb on + strand, within Pf6N2E2_5502 at 6320.842 kb on - strand, within Pf6N2E2_5502 at 6320.842 kb on - strand, within Pf6N2E2_5502 at 6320.979 kb on + strand, within Pf6N2E2_5502 at 6320.979 kb on + strand, within Pf6N2E2_5502 at 6320.980 kb on - strand, within Pf6N2E2_5502 at 6320.980 kb on - strand, within Pf6N2E2_5502 at 6320.980 kb on - strand, within Pf6N2E2_5502 at 6320.980 kb on - strand, within Pf6N2E2_5502 at 6321.107 kb on - strand, within Pf6N2E2_5502 at 6321.267 kb on + strand, within Pf6N2E2_5502 at 6321.267 kb on + strand, within Pf6N2E2_5502 at 6321.268 kb on - strand, within Pf6N2E2_5502 at 6321.268 kb on - strand, within Pf6N2E2_5502 at 6321.268 kb on - strand, within Pf6N2E2_5502 at 6321.360 kb on + strand at 6321.360 kb on + strand at 6321.360 kb on + strand at 6321.520 kb on + strand at 6321.520 kb on + strand at 6321.520 kb on + strand at 6321.521 kb on - strand at 6321.521 kb on - strand at 6321.559 kb on + strand at 6321.560 kb on - strand at 6321.560 kb on - strand at 6321.651 kb on + strand, within Pf6N2E2_5503 at 6321.652 kb on - strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.946 kb on + strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6321.947 kb on - strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.021 kb on + strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.022 kb on - strand, within Pf6N2E2_5503 at 6322.067 kb on - strand, within Pf6N2E2_5503 at 6322.067 kb on - strand, within Pf6N2E2_5503 at 6322.067 kb on - strand, within Pf6N2E2_5503 at 6322.087 kb on + strand, within Pf6N2E2_5503 at 6322.088 kb on - strand, within Pf6N2E2_5503 at 6322.088 kb on - strand, within Pf6N2E2_5503 at 6322.232 kb on - strand, within Pf6N2E2_5503 at 6322.336 kb on + strand, within Pf6N2E2_5503 at 6322.337 kb on - strand, within Pf6N2E2_5503 at 6322.337 kb on - strand, within Pf6N2E2_5503 at 6322.337 kb on - strand, within Pf6N2E2_5503 at 6322.337 kb on - strand, within Pf6N2E2_5503
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 6,319,015 + Pf6N2E2_5501 0.19 -0.9 6,319,015 + Pf6N2E2_5501 0.19 -0.5 6,319,183 + Pf6N2E2_5501 0.34 +0.8 6,319,184 - Pf6N2E2_5501 0.34 -1.2 6,319,258 + Pf6N2E2_5501 0.40 +0.1 6,319,282 + Pf6N2E2_5501 0.42 +0.8 6,319,282 + Pf6N2E2_5501 0.42 +0.8 6,319,282 + Pf6N2E2_5501 0.42 -0.5 6,319,447 + Pf6N2E2_5501 0.57 +0.8 6,319,447 + Pf6N2E2_5501 0.57 +1.2 6,319,447 + Pf6N2E2_5501 0.57 -0.0 6,319,447 + Pf6N2E2_5501 0.57 +0.7 6,319,448 - Pf6N2E2_5501 0.57 +0.4 6,319,448 - Pf6N2E2_5501 0.57 +0.9 6,319,448 - Pf6N2E2_5501 0.57 -1.2 6,319,448 - Pf6N2E2_5501 0.57 -0.1 6,319,448 - Pf6N2E2_5501 0.57 +0.3 6,319,448 - Pf6N2E2_5501 0.57 -0.5 6,319,474 + Pf6N2E2_5501 0.59 +0.6 6,319,474 + Pf6N2E2_5501 0.59 +1.0 6,319,810 + Pf6N2E2_5501 0.88 +1.2 6,319,810 + Pf6N2E2_5501 0.88 +0.5 6,319,810 + Pf6N2E2_5501 0.88 +0.5 6,319,861 + +0.6 6,319,861 + +0.4 6,319,862 - +2.0 6,319,879 + +0.2 6,319,880 - +0.8 6,319,880 - -2.2 6,319,885 + +0.0 6,319,885 + +2.2 6,319,886 - +2.2 6,319,886 - +0.6 6,320,034 + -0.9 6,320,818 - Pf6N2E2_5502 0.56 +1.1 6,320,841 + Pf6N2E2_5502 0.58 +0.1 6,320,841 + Pf6N2E2_5502 0.58 -1.1 6,320,842 - Pf6N2E2_5502 0.58 +0.7 6,320,842 - Pf6N2E2_5502 0.58 +0.8 6,320,979 + Pf6N2E2_5502 0.67 +0.4 6,320,979 + Pf6N2E2_5502 0.67 +0.2 6,320,980 - Pf6N2E2_5502 0.67 +0.6 6,320,980 - Pf6N2E2_5502 0.67 +1.5 6,320,980 - Pf6N2E2_5502 0.67 +1.1 6,320,980 - Pf6N2E2_5502 0.67 +1.0 6,321,107 - Pf6N2E2_5502 0.75 +0.2 6,321,267 + Pf6N2E2_5502 0.85 +2.8 6,321,267 + Pf6N2E2_5502 0.85 -0.9 6,321,268 - Pf6N2E2_5502 0.85 +0.7 6,321,268 - Pf6N2E2_5502 0.85 +1.0 6,321,268 - Pf6N2E2_5502 0.85 +0.4 6,321,360 + -1.1 6,321,360 + -0.2 6,321,360 + +1.2 6,321,520 + +1.1 6,321,520 + +1.1 6,321,520 + +0.2 6,321,521 - +0.9 6,321,521 - +0.2 6,321,559 + -1.5 6,321,560 - +1.1 6,321,560 - +0.8 6,321,651 + Pf6N2E2_5503 0.18 -0.5 6,321,652 - Pf6N2E2_5503 0.18 +0.6 6,321,946 + Pf6N2E2_5503 0.48 -2.1 6,321,946 + Pf6N2E2_5503 0.48 -0.6 6,321,946 + Pf6N2E2_5503 0.48 +0.1 6,321,946 + Pf6N2E2_5503 0.48 +0.5 6,321,946 + Pf6N2E2_5503 0.48 +0.2 6,321,946 + Pf6N2E2_5503 0.48 -0.3 6,321,946 + Pf6N2E2_5503 0.48 +0.2 6,321,947 - Pf6N2E2_5503 0.48 +2.6 6,321,947 - Pf6N2E2_5503 0.48 +1.7 6,321,947 - Pf6N2E2_5503 0.48 +0.0 6,321,947 - Pf6N2E2_5503 0.48 +2.0 6,321,947 - Pf6N2E2_5503 0.48 +0.4 6,321,947 - Pf6N2E2_5503 0.48 +1.0 6,321,947 - Pf6N2E2_5503 0.48 +2.2 6,321,947 - Pf6N2E2_5503 0.48 +1.2 6,321,947 - Pf6N2E2_5503 0.48 +0.6 6,321,947 - Pf6N2E2_5503 0.48 +0.3 6,321,947 - Pf6N2E2_5503 0.48 +1.2 6,321,947 - Pf6N2E2_5503 0.48 +0.4 6,322,021 + Pf6N2E2_5503 0.55 -0.3 6,322,021 + Pf6N2E2_5503 0.55 +0.8 6,322,021 + Pf6N2E2_5503 0.55 +1.0 6,322,021 + Pf6N2E2_5503 0.55 -1.4 6,322,021 + Pf6N2E2_5503 0.55 -2.1 6,322,021 + Pf6N2E2_5503 0.55 +1.4 6,322,021 + Pf6N2E2_5503 0.55 +1.2 6,322,021 + Pf6N2E2_5503 0.55 -0.8 6,322,021 + Pf6N2E2_5503 0.55 -1.0 6,322,021 + Pf6N2E2_5503 0.55 +0.9 6,322,021 + Pf6N2E2_5503 0.55 +1.6 6,322,021 + Pf6N2E2_5503 0.55 -0.5 6,322,021 + Pf6N2E2_5503 0.55 +1.0 6,322,021 + Pf6N2E2_5503 0.55 +0.1 6,322,021 + Pf6N2E2_5503 0.55 -0.2 6,322,021 + Pf6N2E2_5503 0.55 -0.5 6,322,021 + Pf6N2E2_5503 0.55 -0.8 6,322,022 - Pf6N2E2_5503 0.56 -0.8 6,322,022 - Pf6N2E2_5503 0.56 +0.1 6,322,022 - Pf6N2E2_5503 0.56 +0.4 6,322,022 - Pf6N2E2_5503 0.56 -0.1 6,322,022 - Pf6N2E2_5503 0.56 +0.0 6,322,022 - Pf6N2E2_5503 0.56 +0.2 6,322,022 - Pf6N2E2_5503 0.56 -0.8 6,322,022 - Pf6N2E2_5503 0.56 +0.6 6,322,022 - Pf6N2E2_5503 0.56 -1.8 6,322,022 - Pf6N2E2_5503 0.56 +1.0 6,322,022 - Pf6N2E2_5503 0.56 +1.0 6,322,022 - Pf6N2E2_5503 0.56 +1.0 6,322,022 - Pf6N2E2_5503 0.56 +0.3 6,322,022 - Pf6N2E2_5503 0.56 +0.3 6,322,067 - Pf6N2E2_5503 0.60 +1.2 6,322,067 - Pf6N2E2_5503 0.60 +0.4 6,322,067 - Pf6N2E2_5503 0.60 +0.8 6,322,087 + Pf6N2E2_5503 0.62 +0.6 6,322,088 - Pf6N2E2_5503 0.62 +0.3 6,322,088 - Pf6N2E2_5503 0.62 +0.9 6,322,232 - Pf6N2E2_5503 0.77 +1.0 6,322,336 + Pf6N2E2_5503 0.88 -1.1 6,322,337 - Pf6N2E2_5503 0.88 +0.6 6,322,337 - Pf6N2E2_5503 0.88 +1.6 6,322,337 - Pf6N2E2_5503 0.88 +2.2 6,322,337 - Pf6N2E2_5503 0.88 +0.5
Or see this region's nucleotide sequence