Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5502

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5501 and Pf6N2E2_5502 overlap by 4 nucleotidesPf6N2E2_5502 and Pf6N2E2_5503 overlap by 14 nucleotidesPf6N2E2_5503 and Pf6N2E2_5504 overlap by 4 nucleotides Pf6N2E2_5501 - FIG00955538: hypothetical protein, at 6,318,789 to 6,319,952 _5501 Pf6N2E2_5502 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 6,319,949 to 6,321,493 _5502 Pf6N2E2_5503 - FIG01248689: hypothetical protein, at 6,321,480 to 6,322,454 _5503 Pf6N2E2_5504 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 6,322,451 to 6,323,176 _5504 Position (kb) 6319 6320 6321 6322Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6319.015 kb on + strand, within Pf6N2E2_5501at 6319.015 kb on + strand, within Pf6N2E2_5501at 6319.183 kb on + strand, within Pf6N2E2_5501at 6319.184 kb on - strand, within Pf6N2E2_5501at 6319.258 kb on + strand, within Pf6N2E2_5501at 6319.282 kb on + strand, within Pf6N2E2_5501at 6319.282 kb on + strand, within Pf6N2E2_5501at 6319.282 kb on + strand, within Pf6N2E2_5501at 6319.447 kb on + strand, within Pf6N2E2_5501at 6319.447 kb on + strand, within Pf6N2E2_5501at 6319.447 kb on + strand, within Pf6N2E2_5501at 6319.447 kb on + strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.448 kb on - strand, within Pf6N2E2_5501at 6319.474 kb on + strand, within Pf6N2E2_5501at 6319.474 kb on + strand, within Pf6N2E2_5501at 6319.810 kb on + strand, within Pf6N2E2_5501at 6319.810 kb on + strand, within Pf6N2E2_5501at 6319.810 kb on + strand, within Pf6N2E2_5501at 6319.861 kb on + strandat 6319.861 kb on + strandat 6319.862 kb on - strandat 6319.879 kb on + strandat 6319.880 kb on - strandat 6319.880 kb on - strandat 6319.885 kb on + strandat 6319.885 kb on + strandat 6319.886 kb on - strandat 6319.886 kb on - strandat 6320.034 kb on + strandat 6320.818 kb on - strand, within Pf6N2E2_5502at 6320.841 kb on + strand, within Pf6N2E2_5502at 6320.841 kb on + strand, within Pf6N2E2_5502at 6320.842 kb on - strand, within Pf6N2E2_5502at 6320.842 kb on - strand, within Pf6N2E2_5502at 6320.979 kb on + strand, within Pf6N2E2_5502at 6320.979 kb on + strand, within Pf6N2E2_5502at 6320.980 kb on - strand, within Pf6N2E2_5502at 6320.980 kb on - strand, within Pf6N2E2_5502at 6320.980 kb on - strand, within Pf6N2E2_5502at 6320.980 kb on - strand, within Pf6N2E2_5502at 6321.107 kb on - strand, within Pf6N2E2_5502at 6321.267 kb on + strand, within Pf6N2E2_5502at 6321.267 kb on + strand, within Pf6N2E2_5502at 6321.268 kb on - strand, within Pf6N2E2_5502at 6321.268 kb on - strand, within Pf6N2E2_5502at 6321.268 kb on - strand, within Pf6N2E2_5502at 6321.360 kb on + strandat 6321.360 kb on + strandat 6321.360 kb on + strandat 6321.520 kb on + strandat 6321.520 kb on + strandat 6321.520 kb on + strandat 6321.521 kb on - strandat 6321.521 kb on - strandat 6321.559 kb on + strandat 6321.560 kb on - strandat 6321.560 kb on - strandat 6321.651 kb on + strand, within Pf6N2E2_5503at 6321.652 kb on - strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.946 kb on + strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6321.947 kb on - strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.021 kb on + strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.022 kb on - strand, within Pf6N2E2_5503at 6322.067 kb on - strand, within Pf6N2E2_5503at 6322.067 kb on - strand, within Pf6N2E2_5503at 6322.067 kb on - strand, within Pf6N2E2_5503at 6322.087 kb on + strand, within Pf6N2E2_5503at 6322.088 kb on - strand, within Pf6N2E2_5503at 6322.088 kb on - strand, within Pf6N2E2_5503at 6322.232 kb on - strand, within Pf6N2E2_5503at 6322.336 kb on + strand, within Pf6N2E2_5503at 6322.337 kb on - strand, within Pf6N2E2_5503at 6322.337 kb on - strand, within Pf6N2E2_5503at 6322.337 kb on - strand, within Pf6N2E2_5503at 6322.337 kb on - strand, within Pf6N2E2_5503

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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6,319,015 + Pf6N2E2_5501 0.19 -0.9
6,319,015 + Pf6N2E2_5501 0.19 -0.5
6,319,183 + Pf6N2E2_5501 0.34 +0.8
6,319,184 - Pf6N2E2_5501 0.34 -1.2
6,319,258 + Pf6N2E2_5501 0.40 +0.1
6,319,282 + Pf6N2E2_5501 0.42 +0.8
6,319,282 + Pf6N2E2_5501 0.42 +0.8
6,319,282 + Pf6N2E2_5501 0.42 -0.5
6,319,447 + Pf6N2E2_5501 0.57 +0.8
6,319,447 + Pf6N2E2_5501 0.57 +1.2
6,319,447 + Pf6N2E2_5501 0.57 -0.0
6,319,447 + Pf6N2E2_5501 0.57 +0.7
6,319,448 - Pf6N2E2_5501 0.57 +0.4
6,319,448 - Pf6N2E2_5501 0.57 +0.9
6,319,448 - Pf6N2E2_5501 0.57 -1.2
6,319,448 - Pf6N2E2_5501 0.57 -0.1
6,319,448 - Pf6N2E2_5501 0.57 +0.3
6,319,448 - Pf6N2E2_5501 0.57 -0.5
6,319,474 + Pf6N2E2_5501 0.59 +0.6
6,319,474 + Pf6N2E2_5501 0.59 +1.0
6,319,810 + Pf6N2E2_5501 0.88 +1.2
6,319,810 + Pf6N2E2_5501 0.88 +0.5
6,319,810 + Pf6N2E2_5501 0.88 +0.5
6,319,861 + +0.6
6,319,861 + +0.4
6,319,862 - +2.0
6,319,879 + +0.2
6,319,880 - +0.8
6,319,880 - -2.2
6,319,885 + +0.0
6,319,885 + +2.2
6,319,886 - +2.2
6,319,886 - +0.6
6,320,034 + -0.9
6,320,818 - Pf6N2E2_5502 0.56 +1.1
6,320,841 + Pf6N2E2_5502 0.58 +0.1
6,320,841 + Pf6N2E2_5502 0.58 -1.1
6,320,842 - Pf6N2E2_5502 0.58 +0.7
6,320,842 - Pf6N2E2_5502 0.58 +0.8
6,320,979 + Pf6N2E2_5502 0.67 +0.4
6,320,979 + Pf6N2E2_5502 0.67 +0.2
6,320,980 - Pf6N2E2_5502 0.67 +0.6
6,320,980 - Pf6N2E2_5502 0.67 +1.5
6,320,980 - Pf6N2E2_5502 0.67 +1.1
6,320,980 - Pf6N2E2_5502 0.67 +1.0
6,321,107 - Pf6N2E2_5502 0.75 +0.2
6,321,267 + Pf6N2E2_5502 0.85 +2.8
6,321,267 + Pf6N2E2_5502 0.85 -0.9
6,321,268 - Pf6N2E2_5502 0.85 +0.7
6,321,268 - Pf6N2E2_5502 0.85 +1.0
6,321,268 - Pf6N2E2_5502 0.85 +0.4
6,321,360 + -1.1
6,321,360 + -0.2
6,321,360 + +1.2
6,321,520 + +1.1
6,321,520 + +1.1
6,321,520 + +0.2
6,321,521 - +0.9
6,321,521 - +0.2
6,321,559 + -1.5
6,321,560 - +1.1
6,321,560 - +0.8
6,321,651 + Pf6N2E2_5503 0.18 -0.5
6,321,652 - Pf6N2E2_5503 0.18 +0.6
6,321,946 + Pf6N2E2_5503 0.48 -2.1
6,321,946 + Pf6N2E2_5503 0.48 -0.6
6,321,946 + Pf6N2E2_5503 0.48 +0.1
6,321,946 + Pf6N2E2_5503 0.48 +0.5
6,321,946 + Pf6N2E2_5503 0.48 +0.2
6,321,946 + Pf6N2E2_5503 0.48 -0.3
6,321,946 + Pf6N2E2_5503 0.48 +0.2
6,321,947 - Pf6N2E2_5503 0.48 +2.6
6,321,947 - Pf6N2E2_5503 0.48 +1.7
6,321,947 - Pf6N2E2_5503 0.48 +0.0
6,321,947 - Pf6N2E2_5503 0.48 +2.0
6,321,947 - Pf6N2E2_5503 0.48 +0.4
6,321,947 - Pf6N2E2_5503 0.48 +1.0
6,321,947 - Pf6N2E2_5503 0.48 +2.2
6,321,947 - Pf6N2E2_5503 0.48 +1.2
6,321,947 - Pf6N2E2_5503 0.48 +0.6
6,321,947 - Pf6N2E2_5503 0.48 +0.3
6,321,947 - Pf6N2E2_5503 0.48 +1.2
6,321,947 - Pf6N2E2_5503 0.48 +0.4
6,322,021 + Pf6N2E2_5503 0.55 -0.3
6,322,021 + Pf6N2E2_5503 0.55 +0.8
6,322,021 + Pf6N2E2_5503 0.55 +1.0
6,322,021 + Pf6N2E2_5503 0.55 -1.4
6,322,021 + Pf6N2E2_5503 0.55 -2.1
6,322,021 + Pf6N2E2_5503 0.55 +1.4
6,322,021 + Pf6N2E2_5503 0.55 +1.2
6,322,021 + Pf6N2E2_5503 0.55 -0.8
6,322,021 + Pf6N2E2_5503 0.55 -1.0
6,322,021 + Pf6N2E2_5503 0.55 +0.9
6,322,021 + Pf6N2E2_5503 0.55 +1.6
6,322,021 + Pf6N2E2_5503 0.55 -0.5
6,322,021 + Pf6N2E2_5503 0.55 +1.0
6,322,021 + Pf6N2E2_5503 0.55 +0.1
6,322,021 + Pf6N2E2_5503 0.55 -0.2
6,322,021 + Pf6N2E2_5503 0.55 -0.5
6,322,021 + Pf6N2E2_5503 0.55 -0.8
6,322,022 - Pf6N2E2_5503 0.56 -0.8
6,322,022 - Pf6N2E2_5503 0.56 +0.1
6,322,022 - Pf6N2E2_5503 0.56 +0.4
6,322,022 - Pf6N2E2_5503 0.56 -0.1
6,322,022 - Pf6N2E2_5503 0.56 +0.0
6,322,022 - Pf6N2E2_5503 0.56 +0.2
6,322,022 - Pf6N2E2_5503 0.56 -0.8
6,322,022 - Pf6N2E2_5503 0.56 +0.6
6,322,022 - Pf6N2E2_5503 0.56 -1.8
6,322,022 - Pf6N2E2_5503 0.56 +1.0
6,322,022 - Pf6N2E2_5503 0.56 +1.0
6,322,022 - Pf6N2E2_5503 0.56 +1.0
6,322,022 - Pf6N2E2_5503 0.56 +0.3
6,322,022 - Pf6N2E2_5503 0.56 +0.3
6,322,067 - Pf6N2E2_5503 0.60 +1.2
6,322,067 - Pf6N2E2_5503 0.60 +0.4
6,322,067 - Pf6N2E2_5503 0.60 +0.8
6,322,087 + Pf6N2E2_5503 0.62 +0.6
6,322,088 - Pf6N2E2_5503 0.62 +0.3
6,322,088 - Pf6N2E2_5503 0.62 +0.9
6,322,232 - Pf6N2E2_5503 0.77 +1.0
6,322,336 + Pf6N2E2_5503 0.88 -1.1
6,322,337 - Pf6N2E2_5503 0.88 +0.6
6,322,337 - Pf6N2E2_5503 0.88 +1.6
6,322,337 - Pf6N2E2_5503 0.88 +2.2
6,322,337 - Pf6N2E2_5503 0.88 +0.5

Or see this region's nucleotide sequence