Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5099

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5097 and Pf6N2E2_5098 are separated by 206 nucleotidesPf6N2E2_5098 and Pf6N2E2_5099 are separated by 191 nucleotidesPf6N2E2_5099 and Pf6N2E2_5100 are separated by 239 nucleotidesPf6N2E2_5100 and Pf6N2E2_5101 are separated by 35 nucleotides Pf6N2E2_5097 - FIG00953595: hypothetical protein, at 5,880,501 to 5,880,758 _5097 Pf6N2E2_5098 - Alkylphosphonate utilization operon protein PhnA, at 5,880,965 to 5,881,306 _5098 Pf6N2E2_5099 - Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29), at 5,881,498 to 5,882,466 _5099 Pf6N2E2_5100 - LSU ribosomal protein L21p, at 5,882,706 to 5,883,020 _5100 Pf6N2E2_5101 - LSU ribosomal protein L27p, at 5,883,056 to 5,883,313 _5101 Position (kb) 5881 5882 5883Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5880.553 kb on + strand, within Pf6N2E2_5097at 5880.554 kb on - strand, within Pf6N2E2_5097at 5880.715 kb on + strand, within Pf6N2E2_5097at 5880.715 kb on + strand, within Pf6N2E2_5097at 5880.715 kb on + strand, within Pf6N2E2_5097at 5880.715 kb on + strand, within Pf6N2E2_5097at 5880.715 kb on + strand, within Pf6N2E2_5097at 5880.716 kb on - strand, within Pf6N2E2_5097at 5880.751 kb on + strandat 5880.751 kb on + strandat 5880.751 kb on + strandat 5880.751 kb on + strandat 5880.752 kb on - strandat 5880.752 kb on - strandat 5880.752 kb on - strandat 5880.752 kb on - strandat 5880.752 kb on - strandat 5880.752 kb on - strandat 5880.752 kb on - strandat 5880.752 kb on - strandat 5880.752 kb on - strandat 5880.752 kb on - strandat 5880.810 kb on + strandat 5880.821 kb on + strandat 5880.821 kb on + strandat 5880.821 kb on + strandat 5880.822 kb on - strandat 5880.822 kb on - strandat 5880.956 kb on - strandat 5880.956 kb on - strandat 5880.963 kb on + strandat 5881.260 kb on + strand, within Pf6N2E2_5098at 5881.260 kb on + strand, within Pf6N2E2_5098at 5881.260 kb on + strand, within Pf6N2E2_5098at 5881.260 kb on + strand, within Pf6N2E2_5098at 5881.261 kb on - strand, within Pf6N2E2_5098at 5881.261 kb on - strand, within Pf6N2E2_5098at 5881.261 kb on - strand, within Pf6N2E2_5098at 5881.261 kb on - strand, within Pf6N2E2_5098at 5881.261 kb on - strand, within Pf6N2E2_5098at 5881.266 kb on + strand, within Pf6N2E2_5098at 5881.266 kb on + strand, within Pf6N2E2_5098at 5881.266 kb on + strand, within Pf6N2E2_5098at 5881.308 kb on - strandat 5881.308 kb on - strandat 5881.347 kb on + strandat 5881.347 kb on + strandat 5881.347 kb on + strandat 5881.347 kb on + strandat 5881.347 kb on + strandat 5881.347 kb on + strandat 5881.347 kb on + strandat 5881.347 kb on + strandat 5881.347 kb on + strandat 5881.347 kb on + strandat 5881.347 kb on + strandat 5881.347 kb on + strandat 5881.347 kb on + strandat 5881.348 kb on - strandat 5881.348 kb on - strandat 5881.348 kb on - strandat 5881.348 kb on - strandat 5881.348 kb on - strandat 5881.348 kb on - strandat 5881.348 kb on - strandat 5881.348 kb on - strandat 5881.348 kb on - strandat 5881.348 kb on - strandat 5881.349 kb on + strandat 5881.349 kb on + strandat 5881.350 kb on - strandat 5881.351 kb on + strandat 5881.352 kb on - strandat 5881.433 kb on - strandat 5881.496 kb on + strandat 5881.496 kb on + strandat 5881.496 kb on + strandat 5881.496 kb on + strandat 5881.496 kb on + strandat 5881.496 kb on + strandat 5881.497 kb on - strandat 5881.497 kb on - strandat 5881.497 kb on - strandat 5882.504 kb on - strandat 5882.504 kb on - strandat 5882.504 kb on - strandat 5883.392 kb on + strandat 5883.392 kb on + strandat 5883.392 kb on + strandat 5883.458 kb on + strandat 5883.458 kb on + strandat 5883.458 kb on + strandat 5883.458 kb on + strandat 5883.458 kb on + strandat 5883.458 kb on + strandat 5883.458 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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5,880,553 + Pf6N2E2_5097 0.20 -0.3
5,880,554 - Pf6N2E2_5097 0.21 -0.1
5,880,715 + Pf6N2E2_5097 0.83 +0.2
5,880,715 + Pf6N2E2_5097 0.83 -0.3
5,880,715 + Pf6N2E2_5097 0.83 +0.4
5,880,715 + Pf6N2E2_5097 0.83 +0.2
5,880,715 + Pf6N2E2_5097 0.83 -2.1
5,880,716 - Pf6N2E2_5097 0.83 +1.5
5,880,751 + +0.1
5,880,751 + +0.3
5,880,751 + -0.3
5,880,751 + -0.5
5,880,752 - -1.1
5,880,752 - +0.9
5,880,752 - +0.7
5,880,752 - -0.3
5,880,752 - -0.3
5,880,752 - -0.3
5,880,752 - +1.1
5,880,752 - -0.3
5,880,752 - -0.1
5,880,752 - +1.1
5,880,810 + +0.2
5,880,821 + -1.4
5,880,821 + +0.3
5,880,821 + -0.8
5,880,822 - +0.1
5,880,822 - +0.7
5,880,956 - -0.7
5,880,956 - +0.7
5,880,963 + +0.8
5,881,260 + Pf6N2E2_5098 0.86 +0.6
5,881,260 + Pf6N2E2_5098 0.86 +0.3
5,881,260 + Pf6N2E2_5098 0.86 -0.6
5,881,260 + Pf6N2E2_5098 0.86 +1.0
5,881,261 - Pf6N2E2_5098 0.87 +1.2
5,881,261 - Pf6N2E2_5098 0.87 +1.2
5,881,261 - Pf6N2E2_5098 0.87 -2.0
5,881,261 - Pf6N2E2_5098 0.87 +1.3
5,881,261 - Pf6N2E2_5098 0.87 -0.3
5,881,266 + Pf6N2E2_5098 0.88 -0.9
5,881,266 + Pf6N2E2_5098 0.88 -1.8
5,881,266 + Pf6N2E2_5098 0.88 -0.1
5,881,308 - +0.7
5,881,308 - -0.3
5,881,347 + +0.7
5,881,347 + -2.2
5,881,347 + -0.5
5,881,347 + -1.1
5,881,347 + -2.9
5,881,347 + -0.6
5,881,347 + -1.8
5,881,347 + +0.7
5,881,347 + +1.3
5,881,347 + +1.1
5,881,347 + +0.7
5,881,347 + +0.3
5,881,347 + -2.3
5,881,348 - -1.0
5,881,348 - -1.3
5,881,348 - -0.0
5,881,348 - +0.4
5,881,348 - -0.8
5,881,348 - +0.8
5,881,348 - +0.2
5,881,348 - +1.9
5,881,348 - -1.3
5,881,348 - +0.9
5,881,349 + -1.7
5,881,349 + +1.9
5,881,350 - +1.3
5,881,351 + +0.3
5,881,352 - +0.7
5,881,433 - +0.3
5,881,496 + -0.3
5,881,496 + -0.6
5,881,496 + -0.7
5,881,496 + -1.7
5,881,496 + -2.8
5,881,496 + -0.3
5,881,497 - +0.0
5,881,497 - -0.3
5,881,497 - -0.3
5,882,504 - +0.6
5,882,504 - -0.7
5,882,504 - +0.0
5,883,392 + +0.8
5,883,392 + +0.9
5,883,392 + +1.0
5,883,458 + +1.2
5,883,458 + +1.2
5,883,458 + +0.3
5,883,458 + +1.2
5,883,458 + +1.0
5,883,458 + +0.0
5,883,458 + +0.3

Or see this region's nucleotide sequence