Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5097 and Pf6N2E2_5098 are separated by 206 nucleotides Pf6N2E2_5098 and Pf6N2E2_5099 are separated by 191 nucleotides Pf6N2E2_5099 and Pf6N2E2_5100 are separated by 239 nucleotides Pf6N2E2_5100 and Pf6N2E2_5101 are separated by 35 nucleotides
Pf6N2E2_5097 - FIG00953595: hypothetical protein, at 5,880,501 to 5,880,758
_5097
Pf6N2E2_5098 - Alkylphosphonate utilization operon protein PhnA, at 5,880,965 to 5,881,306
_5098
Pf6N2E2_5099 - Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29), at 5,881,498 to 5,882,466
_5099
Pf6N2E2_5100 - LSU ribosomal protein L21p, at 5,882,706 to 5,883,020
_5100
Pf6N2E2_5101 - LSU ribosomal protein L27p, at 5,883,056 to 5,883,313
_5101
Position (kb)
5881
5882
5883 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5880.553 kb on + strand, within Pf6N2E2_5097 at 5880.554 kb on - strand, within Pf6N2E2_5097 at 5880.715 kb on + strand, within Pf6N2E2_5097 at 5880.715 kb on + strand, within Pf6N2E2_5097 at 5880.715 kb on + strand, within Pf6N2E2_5097 at 5880.715 kb on + strand, within Pf6N2E2_5097 at 5880.715 kb on + strand, within Pf6N2E2_5097 at 5880.716 kb on - strand, within Pf6N2E2_5097 at 5880.751 kb on + strand at 5880.751 kb on + strand at 5880.751 kb on + strand at 5880.751 kb on + strand at 5880.752 kb on - strand at 5880.752 kb on - strand at 5880.752 kb on - strand at 5880.752 kb on - strand at 5880.752 kb on - strand at 5880.752 kb on - strand at 5880.752 kb on - strand at 5880.752 kb on - strand at 5880.752 kb on - strand at 5880.752 kb on - strand at 5880.810 kb on + strand at 5880.821 kb on + strand at 5880.821 kb on + strand at 5880.821 kb on + strand at 5880.822 kb on - strand at 5880.822 kb on - strand at 5880.956 kb on - strand at 5880.956 kb on - strand at 5880.963 kb on + strand at 5881.260 kb on + strand, within Pf6N2E2_5098 at 5881.260 kb on + strand, within Pf6N2E2_5098 at 5881.260 kb on + strand, within Pf6N2E2_5098 at 5881.260 kb on + strand, within Pf6N2E2_5098 at 5881.261 kb on - strand, within Pf6N2E2_5098 at 5881.261 kb on - strand, within Pf6N2E2_5098 at 5881.261 kb on - strand, within Pf6N2E2_5098 at 5881.261 kb on - strand, within Pf6N2E2_5098 at 5881.261 kb on - strand, within Pf6N2E2_5098 at 5881.266 kb on + strand, within Pf6N2E2_5098 at 5881.266 kb on + strand, within Pf6N2E2_5098 at 5881.266 kb on + strand, within Pf6N2E2_5098 at 5881.308 kb on - strand at 5881.308 kb on - strand at 5881.347 kb on + strand at 5881.347 kb on + strand at 5881.347 kb on + strand at 5881.347 kb on + strand at 5881.347 kb on + strand at 5881.347 kb on + strand at 5881.347 kb on + strand at 5881.347 kb on + strand at 5881.347 kb on + strand at 5881.347 kb on + strand at 5881.347 kb on + strand at 5881.347 kb on + strand at 5881.347 kb on + strand at 5881.348 kb on - strand at 5881.348 kb on - strand at 5881.348 kb on - strand at 5881.348 kb on - strand at 5881.348 kb on - strand at 5881.348 kb on - strand at 5881.348 kb on - strand at 5881.348 kb on - strand at 5881.348 kb on - strand at 5881.348 kb on - strand at 5881.349 kb on + strand at 5881.349 kb on + strand at 5881.350 kb on - strand at 5881.351 kb on + strand at 5881.352 kb on - strand at 5881.433 kb on - strand at 5881.496 kb on + strand at 5881.496 kb on + strand at 5881.496 kb on + strand at 5881.496 kb on + strand at 5881.496 kb on + strand at 5881.496 kb on + strand at 5881.497 kb on - strand at 5881.497 kb on - strand at 5881.497 kb on - strand at 5882.504 kb on - strand at 5882.504 kb on - strand at 5882.504 kb on - strand at 5883.392 kb on + strand at 5883.392 kb on + strand at 5883.392 kb on + strand at 5883.458 kb on + strand at 5883.458 kb on + strand at 5883.458 kb on + strand at 5883.458 kb on + strand at 5883.458 kb on + strand at 5883.458 kb on + strand at 5883.458 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 5,880,553 + Pf6N2E2_5097 0.20 -0.3 5,880,554 - Pf6N2E2_5097 0.21 -0.1 5,880,715 + Pf6N2E2_5097 0.83 +0.2 5,880,715 + Pf6N2E2_5097 0.83 -0.3 5,880,715 + Pf6N2E2_5097 0.83 +0.4 5,880,715 + Pf6N2E2_5097 0.83 +0.2 5,880,715 + Pf6N2E2_5097 0.83 -2.1 5,880,716 - Pf6N2E2_5097 0.83 +1.5 5,880,751 + +0.1 5,880,751 + +0.3 5,880,751 + -0.3 5,880,751 + -0.5 5,880,752 - -1.1 5,880,752 - +0.9 5,880,752 - +0.7 5,880,752 - -0.3 5,880,752 - -0.3 5,880,752 - -0.3 5,880,752 - +1.1 5,880,752 - -0.3 5,880,752 - -0.1 5,880,752 - +1.1 5,880,810 + +0.2 5,880,821 + -1.4 5,880,821 + +0.3 5,880,821 + -0.8 5,880,822 - +0.1 5,880,822 - +0.7 5,880,956 - -0.7 5,880,956 - +0.7 5,880,963 + +0.8 5,881,260 + Pf6N2E2_5098 0.86 +0.6 5,881,260 + Pf6N2E2_5098 0.86 +0.3 5,881,260 + Pf6N2E2_5098 0.86 -0.6 5,881,260 + Pf6N2E2_5098 0.86 +1.0 5,881,261 - Pf6N2E2_5098 0.87 +1.2 5,881,261 - Pf6N2E2_5098 0.87 +1.2 5,881,261 - Pf6N2E2_5098 0.87 -2.0 5,881,261 - Pf6N2E2_5098 0.87 +1.3 5,881,261 - Pf6N2E2_5098 0.87 -0.3 5,881,266 + Pf6N2E2_5098 0.88 -0.9 5,881,266 + Pf6N2E2_5098 0.88 -1.8 5,881,266 + Pf6N2E2_5098 0.88 -0.1 5,881,308 - +0.7 5,881,308 - -0.3 5,881,347 + +0.7 5,881,347 + -2.2 5,881,347 + -0.5 5,881,347 + -1.1 5,881,347 + -2.9 5,881,347 + -0.6 5,881,347 + -1.8 5,881,347 + +0.7 5,881,347 + +1.3 5,881,347 + +1.1 5,881,347 + +0.7 5,881,347 + +0.3 5,881,347 + -2.3 5,881,348 - -1.0 5,881,348 - -1.3 5,881,348 - -0.0 5,881,348 - +0.4 5,881,348 - -0.8 5,881,348 - +0.8 5,881,348 - +0.2 5,881,348 - +1.9 5,881,348 - -1.3 5,881,348 - +0.9 5,881,349 + -1.7 5,881,349 + +1.9 5,881,350 - +1.3 5,881,351 + +0.3 5,881,352 - +0.7 5,881,433 - +0.3 5,881,496 + -0.3 5,881,496 + -0.6 5,881,496 + -0.7 5,881,496 + -1.7 5,881,496 + -2.8 5,881,496 + -0.3 5,881,497 - +0.0 5,881,497 - -0.3 5,881,497 - -0.3 5,882,504 - +0.6 5,882,504 - -0.7 5,882,504 - +0.0 5,883,392 + +0.8 5,883,392 + +0.9 5,883,392 + +1.0 5,883,458 + +1.2 5,883,458 + +1.2 5,883,458 + +0.3 5,883,458 + +1.2 5,883,458 + +1.0 5,883,458 + +0.0 5,883,458 + +0.3
Or see this region's nucleotide sequence