Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_458

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_457 and Pf6N2E2_458 are separated by 299 nucleotidesPf6N2E2_458 and Pf6N2E2_459 are separated by 174 nucleotides Pf6N2E2_457 - hypothetical protein, at 520,626 to 521,573 _457 Pf6N2E2_458 - Protein rarD, at 521,873 to 522,757 _458 Pf6N2E2_459 - Oxidoreductase, aldo/keto reductase family, at 522,932 to 523,945 _459 Position (kb) 521 522 523Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 521.774 kb on + strandat 521.774 kb on + strandat 521.774 kb on + strandat 521.774 kb on + strandat 521.774 kb on + strandat 521.774 kb on + strandat 521.774 kb on + strandat 521.774 kb on + strandat 521.774 kb on + strandat 521.774 kb on + strandat 521.774 kb on + strandat 521.811 kb on + strandat 521.812 kb on - strandat 521.812 kb on - strandat 521.874 kb on + strandat 521.874 kb on + strandat 521.874 kb on + strandat 521.874 kb on + strandat 521.875 kb on - strandat 521.875 kb on - strandat 521.952 kb on + strandat 521.952 kb on + strandat 521.952 kb on + strandat 521.952 kb on + strandat 521.953 kb on - strandat 521.953 kb on - strandat 521.953 kb on - strandat 522.027 kb on + strand, within Pf6N2E2_458at 522.027 kb on + strand, within Pf6N2E2_458at 522.027 kb on + strand, within Pf6N2E2_458at 522.028 kb on - strand, within Pf6N2E2_458at 522.028 kb on - strand, within Pf6N2E2_458at 522.028 kb on - strand, within Pf6N2E2_458at 522.028 kb on - strand, within Pf6N2E2_458at 522.078 kb on + strand, within Pf6N2E2_458at 522.079 kb on - strand, within Pf6N2E2_458at 522.079 kb on - strand, within Pf6N2E2_458at 522.142 kb on - strand, within Pf6N2E2_458at 522.270 kb on + strand, within Pf6N2E2_458at 522.270 kb on + strand, within Pf6N2E2_458at 522.271 kb on - strand, within Pf6N2E2_458at 522.271 kb on - strand, within Pf6N2E2_458at 522.271 kb on - strand, within Pf6N2E2_458at 522.271 kb on - strand, within Pf6N2E2_458at 522.328 kb on - strand, within Pf6N2E2_458at 522.328 kb on - strand, within Pf6N2E2_458at 522.381 kb on + strand, within Pf6N2E2_458at 522.382 kb on - strand, within Pf6N2E2_458at 522.382 kb on - strand, within Pf6N2E2_458at 522.400 kb on - strand, within Pf6N2E2_458at 522.400 kb on - strand, within Pf6N2E2_458at 522.400 kb on - strand, within Pf6N2E2_458at 522.468 kb on + strand, within Pf6N2E2_458at 522.469 kb on - strand, within Pf6N2E2_458at 522.530 kb on + strand, within Pf6N2E2_458at 522.531 kb on - strand, within Pf6N2E2_458at 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.696 kb on + strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.697 kb on - strandat 522.699 kb on + strandat 522.699 kb on + strandat 522.699 kb on + strandat 522.699 kb on + strandat 522.700 kb on - strandat 522.702 kb on + strandat 522.702 kb on + strandat 522.702 kb on + strandat 522.702 kb on + strandat 522.703 kb on - strandat 522.703 kb on - strandat 522.703 kb on - strandat 522.703 kb on - strandat 522.703 kb on - strandat 522.761 kb on + strandat 522.762 kb on - strandat 522.762 kb on - strandat 522.782 kb on + strandat 522.782 kb on + strandat 522.783 kb on - strandat 522.783 kb on - strandat 522.783 kb on - strandat 522.807 kb on + strandat 522.807 kb on + strandat 522.895 kb on + strandat 522.933 kb on + strandat 522.933 kb on + strandat 522.933 kb on + strandat 522.934 kb on - strandat 522.934 kb on - strandat 522.934 kb on - strandat 523.072 kb on - strand, within Pf6N2E2_459at 523.072 kb on - strand, within Pf6N2E2_459at 523.185 kb on + strand, within Pf6N2E2_459at 523.185 kb on + strand, within Pf6N2E2_459at 523.356 kb on + strand, within Pf6N2E2_459at 523.356 kb on + strand, within Pf6N2E2_459at 523.357 kb on - strand, within Pf6N2E2_459at 523.357 kb on - strand, within Pf6N2E2_459at 523.357 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.411 kb on - strand, within Pf6N2E2_459at 523.492 kb on - strand, within Pf6N2E2_459at 523.593 kb on + strand, within Pf6N2E2_459at 523.593 kb on + strand, within Pf6N2E2_459at 523.594 kb on - strand, within Pf6N2E2_459at 523.594 kb on - strand, within Pf6N2E2_459at 523.594 kb on - strandat 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.596 kb on + strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.597 kb on - strand, within Pf6N2E2_459at 523.608 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.652 kb on + strand, within Pf6N2E2_459at 523.653 kb on - strand, within Pf6N2E2_459

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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521,774 + -0.3
521,774 + -0.6
521,774 + -0.8
521,774 + -1.2
521,774 + -0.2
521,774 + +0.7
521,774 + -1.2
521,774 + -0.9
521,774 + +0.8
521,774 + +0.3
521,774 + -0.0
521,811 + +1.1
521,812 - +0.2
521,812 - -0.4
521,874 + -1.6
521,874 + +0.7
521,874 + -0.6
521,874 + -0.7
521,875 - -0.2
521,875 - +0.6
521,952 + +1.4
521,952 + +2.0
521,952 + +1.4
521,952 + +2.1
521,953 - +0.6
521,953 - +1.0
521,953 - -0.0
522,027 + Pf6N2E2_458 0.17 -0.0
522,027 + Pf6N2E2_458 0.17 +1.5
522,027 + Pf6N2E2_458 0.17 +1.4
522,028 - Pf6N2E2_458 0.18 +0.6
522,028 - Pf6N2E2_458 0.18 +0.6
522,028 - Pf6N2E2_458 0.18 +0.8
522,028 - Pf6N2E2_458 0.18 -0.0
522,078 + Pf6N2E2_458 0.23 -0.0
522,079 - Pf6N2E2_458 0.23 +1.2
522,079 - Pf6N2E2_458 0.23 +1.3
522,142 - Pf6N2E2_458 0.30 +0.3
522,270 + Pf6N2E2_458 0.45 +1.2
522,270 + Pf6N2E2_458 0.45 +0.5
522,271 - Pf6N2E2_458 0.45 +0.7
522,271 - Pf6N2E2_458 0.45 +0.7
522,271 - Pf6N2E2_458 0.45 +2.0
522,271 - Pf6N2E2_458 0.45 +0.3
522,328 - Pf6N2E2_458 0.51 -0.5
522,328 - Pf6N2E2_458 0.51 +0.8
522,381 + Pf6N2E2_458 0.57 +0.3
522,382 - Pf6N2E2_458 0.58 +0.5
522,382 - Pf6N2E2_458 0.58 -1.8
522,400 - Pf6N2E2_458 0.60 +0.5
522,400 - Pf6N2E2_458 0.60 +2.0
522,400 - Pf6N2E2_458 0.60 +1.0
522,468 + Pf6N2E2_458 0.67 +0.6
522,469 - Pf6N2E2_458 0.67 +1.0
522,530 + Pf6N2E2_458 0.74 +0.3
522,531 - Pf6N2E2_458 0.74 -0.0
522,696 + +1.2
522,696 + +0.2
522,696 + +1.0
522,696 + -0.2
522,696 + +0.5
522,696 + -1.2
522,696 + +2.4
522,696 + -0.8
522,697 - -0.0
522,697 - +2.5
522,697 - +1.0
522,697 - +1.2
522,697 - +0.4
522,697 - -1.6
522,699 + -0.8
522,699 + +0.3
522,699 + +2.0
522,699 + +0.4
522,700 - +0.2
522,702 + -0.0
522,702 + +0.7
522,702 + +0.3
522,702 + +0.0
522,703 - +1.0
522,703 - -0.7
522,703 - +0.5
522,703 - +3.0
522,703 - +0.4
522,761 + +0.5
522,762 - +1.2
522,762 - +1.4
522,782 + -0.2
522,782 + -0.6
522,783 - +1.0
522,783 - +1.0
522,783 - -1.0
522,807 + +1.0
522,807 + +1.5
522,895 + +0.4
522,933 + -1.0
522,933 + +0.0
522,933 + +0.5
522,934 - -0.4
522,934 - +1.0
522,934 - +1.0
523,072 - Pf6N2E2_459 0.14 +0.2
523,072 - Pf6N2E2_459 0.14 +1.2
523,185 + Pf6N2E2_459 0.25 +0.2
523,185 + Pf6N2E2_459 0.25 +0.1
523,356 + Pf6N2E2_459 0.42 -0.6
523,356 + Pf6N2E2_459 0.42 -0.0
523,357 - Pf6N2E2_459 0.42 -0.4
523,357 - Pf6N2E2_459 0.42 -1.0
523,357 - Pf6N2E2_459 0.42 +0.5
523,411 - Pf6N2E2_459 0.47 +1.0
523,411 - Pf6N2E2_459 0.47 -0.0
523,411 - Pf6N2E2_459 0.47 -1.4
523,411 - Pf6N2E2_459 0.47 +1.8
523,411 - Pf6N2E2_459 0.47 +0.3
523,492 - Pf6N2E2_459 0.55 +0.2
523,593 + Pf6N2E2_459 0.65 -0.5
523,593 + Pf6N2E2_459 0.65 +0.7
523,594 - Pf6N2E2_459 0.65 +0.5
523,594 - Pf6N2E2_459 0.65 -0.6
523,594 - +2.0
523,596 + Pf6N2E2_459 0.65 +0.3
523,596 + Pf6N2E2_459 0.65 -0.0
523,596 + Pf6N2E2_459 0.65 +5.0
523,596 + Pf6N2E2_459 0.65 -0.0
523,596 + Pf6N2E2_459 0.65 -1.8
523,596 + Pf6N2E2_459 0.65 +1.0
523,596 + Pf6N2E2_459 0.65 -0.4
523,596 + Pf6N2E2_459 0.65 +0.3
523,596 + Pf6N2E2_459 0.65 -1.2
523,596 + Pf6N2E2_459 0.65 +1.8
523,596 + Pf6N2E2_459 0.65 +1.1
523,596 + Pf6N2E2_459 0.65 +1.8
523,597 - Pf6N2E2_459 0.66 -1.0
523,597 - Pf6N2E2_459 0.66 -0.8
523,597 - Pf6N2E2_459 0.66 +2.0
523,597 - Pf6N2E2_459 0.66 +0.8
523,597 - Pf6N2E2_459 0.66 -0.3
523,597 - Pf6N2E2_459 0.66 +0.4
523,597 - Pf6N2E2_459 0.66 -0.3
523,597 - Pf6N2E2_459 0.66 -0.7
523,597 - Pf6N2E2_459 0.66 +1.0
523,597 - Pf6N2E2_459 0.66 +2.7
523,597 - Pf6N2E2_459 0.66 +0.4
523,608 + Pf6N2E2_459 0.67 -0.6
523,652 + Pf6N2E2_459 0.71 +1.7
523,652 + Pf6N2E2_459 0.71 -1.2
523,652 + Pf6N2E2_459 0.71 +1.0
523,652 + Pf6N2E2_459 0.71 -0.1
523,652 + Pf6N2E2_459 0.71 +2.0
523,653 - Pf6N2E2_459 0.71 -1.4

Or see this region's nucleotide sequence