Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4481

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4480 and Pf6N2E2_4481 overlap by 4 nucleotidesPf6N2E2_4481 and Pf6N2E2_4482 are separated by 61 nucleotides Pf6N2E2_4480 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 5,211,304 to 5,212,638 _4480 Pf6N2E2_4481 - 2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-), at 5,212,635 to 5,213,822 _4481 Pf6N2E2_4482 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 5,213,884 to 5,215,107 _4482 Position (kb) 5212 5213 5214Strain fitness (log2 ratio) -1 0 1 2at 5211.685 kb on + strand, within Pf6N2E2_4480at 5211.685 kb on + strand, within Pf6N2E2_4480at 5211.685 kb on + strand, within Pf6N2E2_4480at 5211.685 kb on + strand, within Pf6N2E2_4480at 5211.826 kb on + strand, within Pf6N2E2_4480at 5211.826 kb on + strand, within Pf6N2E2_4480at 5211.826 kb on + strand, within Pf6N2E2_4480at 5211.828 kb on + strand, within Pf6N2E2_4480at 5211.828 kb on + strand, within Pf6N2E2_4480at 5211.828 kb on + strand, within Pf6N2E2_4480at 5211.828 kb on + strand, within Pf6N2E2_4480at 5211.828 kb on + strand, within Pf6N2E2_4480at 5211.828 kb on + strand, within Pf6N2E2_4480at 5211.952 kb on + strand, within Pf6N2E2_4480at 5211.952 kb on + strand, within Pf6N2E2_4480at 5211.988 kb on + strand, within Pf6N2E2_4480at 5211.988 kb on + strand, within Pf6N2E2_4480at 5212.033 kb on + strand, within Pf6N2E2_4480at 5212.033 kb on + strand, within Pf6N2E2_4480at 5212.105 kb on + strand, within Pf6N2E2_4480at 5212.171 kb on + strand, within Pf6N2E2_4480at 5212.171 kb on + strand, within Pf6N2E2_4480at 5212.171 kb on + strand, within Pf6N2E2_4480at 5212.171 kb on + strand, within Pf6N2E2_4480at 5212.172 kb on - strand, within Pf6N2E2_4480at 5212.266 kb on + strand, within Pf6N2E2_4480at 5212.266 kb on + strand, within Pf6N2E2_4480at 5212.266 kb on + strand, within Pf6N2E2_4480at 5212.267 kb on - strand, within Pf6N2E2_4480at 5212.345 kb on + strand, within Pf6N2E2_4480at 5212.345 kb on + strand, within Pf6N2E2_4480at 5212.345 kb on + strand, within Pf6N2E2_4480at 5212.345 kb on + strand, within Pf6N2E2_4480at 5212.345 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.465 kb on + strand, within Pf6N2E2_4480at 5212.538 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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5,211,685 + Pf6N2E2_4480 0.29 -0.3
5,211,685 + Pf6N2E2_4480 0.29 +1.9
5,211,685 + Pf6N2E2_4480 0.29 -0.7
5,211,685 + Pf6N2E2_4480 0.29 -0.3
5,211,826 + Pf6N2E2_4480 0.39 +1.6
5,211,826 + Pf6N2E2_4480 0.39 +0.5
5,211,826 + Pf6N2E2_4480 0.39 +0.4
5,211,828 + Pf6N2E2_4480 0.39 -0.3
5,211,828 + Pf6N2E2_4480 0.39 +1.4
5,211,828 + Pf6N2E2_4480 0.39 -0.2
5,211,828 + Pf6N2E2_4480 0.39 +0.8
5,211,828 + Pf6N2E2_4480 0.39 +0.8
5,211,828 + Pf6N2E2_4480 0.39 +0.8
5,211,952 + Pf6N2E2_4480 0.49 +0.7
5,211,952 + Pf6N2E2_4480 0.49 +0.3
5,211,988 + Pf6N2E2_4480 0.51 -0.2
5,211,988 + Pf6N2E2_4480 0.51 -0.3
5,212,033 + Pf6N2E2_4480 0.55 -0.1
5,212,033 + Pf6N2E2_4480 0.55 -1.1
5,212,105 + Pf6N2E2_4480 0.60 +1.1
5,212,171 + Pf6N2E2_4480 0.65 -0.0
5,212,171 + Pf6N2E2_4480 0.65 -0.3
5,212,171 + Pf6N2E2_4480 0.65 +0.0
5,212,171 + Pf6N2E2_4480 0.65 +2.0
5,212,172 - Pf6N2E2_4480 0.65 +0.0
5,212,266 + Pf6N2E2_4480 0.72 +0.4
5,212,266 + Pf6N2E2_4480 0.72 +1.1
5,212,266 + Pf6N2E2_4480 0.72 +0.7
5,212,267 - Pf6N2E2_4480 0.72 +1.6
5,212,345 + Pf6N2E2_4480 0.78 +2.1
5,212,345 + Pf6N2E2_4480 0.78 +0.3
5,212,345 + Pf6N2E2_4480 0.78 +0.4
5,212,345 + Pf6N2E2_4480 0.78 +0.6
5,212,345 + Pf6N2E2_4480 0.78 +0.4
5,212,465 + Pf6N2E2_4480 0.87 +1.0
5,212,465 + Pf6N2E2_4480 0.87 +0.7
5,212,465 + Pf6N2E2_4480 0.87 +0.3
5,212,465 + Pf6N2E2_4480 0.87 +0.7
5,212,465 + Pf6N2E2_4480 0.87 -0.3
5,212,465 + Pf6N2E2_4480 0.87 -1.2
5,212,465 + Pf6N2E2_4480 0.87 +2.6
5,212,465 + Pf6N2E2_4480 0.87 -0.1
5,212,465 + Pf6N2E2_4480 0.87 +0.5
5,212,465 + Pf6N2E2_4480 0.87 +0.5
5,212,465 + Pf6N2E2_4480 0.87 +0.5
5,212,465 + Pf6N2E2_4480 0.87 +1.3
5,212,465 + Pf6N2E2_4480 0.87 -1.4
5,212,465 + Pf6N2E2_4480 0.87 +0.4
5,212,538 + +0.6

Or see this region's nucleotide sequence