Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2307

Experiment: Cobalt chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2305 and Pf6N2E2_2306 are separated by 10 nucleotidesPf6N2E2_2306 and Pf6N2E2_2307 are separated by 27 nucleotidesPf6N2E2_2307 and Pf6N2E2_2308 overlap by 4 nucleotides Pf6N2E2_2305 - Cytochrome c oxidase subunit CcoN (EC 1.9.3.1), at 2,730,529 to 2,731,953 _2305 Pf6N2E2_2306 - Cytochrome c oxidase subunit CcoO (EC 1.9.3.1), at 2,731,964 to 2,732,572 _2306 Pf6N2E2_2307 - Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1), at 2,732,600 to 2,732,779 _2307 Pf6N2E2_2308 - Cytochrome c oxidase subunit CcoP (EC 1.9.3.1), at 2,732,776 to 2,733,732 _2308 Position (kb) 2732 2733Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2731.615 kb on + strand, within Pf6N2E2_2305at 2731.616 kb on - strand, within Pf6N2E2_2305at 2731.712 kb on - strand, within Pf6N2E2_2305at 2731.789 kb on + strand, within Pf6N2E2_2305at 2731.790 kb on - strand, within Pf6N2E2_2305at 2731.790 kb on - strand, within Pf6N2E2_2305at 2731.885 kb on + strandat 2731.885 kb on + strandat 2731.885 kb on + strandat 2731.886 kb on - strandat 2732.138 kb on + strand, within Pf6N2E2_2306at 2732.138 kb on + strand, within Pf6N2E2_2306at 2732.138 kb on + strand, within Pf6N2E2_2306at 2732.138 kb on + strand, within Pf6N2E2_2306at 2732.139 kb on - strand, within Pf6N2E2_2306at 2732.336 kb on + strand, within Pf6N2E2_2306at 2732.337 kb on - strand, within Pf6N2E2_2306at 2732.594 kb on - strandat 2732.594 kb on - strandat 2732.662 kb on - strand, within Pf6N2E2_2307at 2732.793 kb on + strandat 2732.793 kb on + strandat 2732.793 kb on + strandat 2732.794 kb on - strandat 2732.924 kb on - strand, within Pf6N2E2_2308at 2732.924 kb on - strand, within Pf6N2E2_2308at 2733.027 kb on + strand, within Pf6N2E2_2308at 2733.350 kb on + strand, within Pf6N2E2_2308at 2733.385 kb on + strand, within Pf6N2E2_2308at 2733.386 kb on - strand, within Pf6N2E2_2308at 2733.386 kb on - strand, within Pf6N2E2_2308at 2733.390 kb on - strand, within Pf6N2E2_2308at 2733.553 kb on + strand, within Pf6N2E2_2308at 2733.553 kb on + strand, within Pf6N2E2_2308at 2733.553 kb on + strand, within Pf6N2E2_2308at 2733.554 kb on - strand, within Pf6N2E2_2308at 2733.609 kb on + strand, within Pf6N2E2_2308at 2733.610 kb on - strand, within Pf6N2E2_2308at 2733.610 kb on - strand, within Pf6N2E2_2308at 2733.633 kb on - strand, within Pf6N2E2_2308at 2733.664 kb on + strandat 2733.665 kb on - strandat 2733.670 kb on + strandat 2733.671 kb on - strandat 2733.730 kb on + strandat 2733.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM
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2,731,615 + Pf6N2E2_2305 0.76 +0.3
2,731,616 - Pf6N2E2_2305 0.76 +1.9
2,731,712 - Pf6N2E2_2305 0.83 -1.2
2,731,789 + Pf6N2E2_2305 0.88 +2.0
2,731,790 - Pf6N2E2_2305 0.88 -0.8
2,731,790 - Pf6N2E2_2305 0.88 +0.6
2,731,885 + -2.3
2,731,885 + -0.6
2,731,885 + +2.0
2,731,886 - -0.4
2,732,138 + Pf6N2E2_2306 0.29 +0.1
2,732,138 + Pf6N2E2_2306 0.29 +1.0
2,732,138 + Pf6N2E2_2306 0.29 -0.9
2,732,138 + Pf6N2E2_2306 0.29 -0.4
2,732,139 - Pf6N2E2_2306 0.29 -1.0
2,732,336 + Pf6N2E2_2306 0.61 +0.0
2,732,337 - Pf6N2E2_2306 0.61 -0.9
2,732,594 - +0.1
2,732,594 - -1.0
2,732,662 - Pf6N2E2_2307 0.34 +0.2
2,732,793 + -0.5
2,732,793 + +2.8
2,732,793 + -0.5
2,732,794 - +1.0
2,732,924 - Pf6N2E2_2308 0.15 -1.8
2,732,924 - Pf6N2E2_2308 0.15 +0.4
2,733,027 + Pf6N2E2_2308 0.26 +0.5
2,733,350 + Pf6N2E2_2308 0.60 -1.3
2,733,385 + Pf6N2E2_2308 0.64 -2.4
2,733,386 - Pf6N2E2_2308 0.64 -0.7
2,733,386 - Pf6N2E2_2308 0.64 -0.1
2,733,390 - Pf6N2E2_2308 0.64 -0.7
2,733,553 + Pf6N2E2_2308 0.81 -1.0
2,733,553 + Pf6N2E2_2308 0.81 +0.1
2,733,553 + Pf6N2E2_2308 0.81 -1.6
2,733,554 - Pf6N2E2_2308 0.81 +0.1
2,733,609 + Pf6N2E2_2308 0.87 -0.2
2,733,610 - Pf6N2E2_2308 0.87 -2.0
2,733,610 - Pf6N2E2_2308 0.87 +1.0
2,733,633 - Pf6N2E2_2308 0.90 +2.0
2,733,664 + -0.6
2,733,665 - -1.0
2,733,670 + +0.0
2,733,671 - -2.6
2,733,730 + +0.2
2,733,731 - -0.2

Or see this region's nucleotide sequence