Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2086 and Pf6N2E2_2087 are separated by 7 nucleotides Pf6N2E2_2087 and Pf6N2E2_2088 overlap by 1 nucleotides Pf6N2E2_2088 and Pf6N2E2_2089 are separated by 80 nucleotides
Pf6N2E2_2086 - DNA polymerase-like protein PA0670, at 2,481,739 to 2,483,160
_2086
Pf6N2E2_2087 - RecA/RadA recombinase, at 2,483,168 to 2,483,800
_2087
Pf6N2E2_2088 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 2,483,800 to 2,484,417
_2088
Pf6N2E2_2089 - Transcriptional regulator, AraC family, at 2,484,498 to 2,485,541
_2089
Position (kb)
2483
2484
2485 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2482.858 kb on - strand, within Pf6N2E2_2086 at 2482.858 kb on - strand, within Pf6N2E2_2086 at 2482.858 kb on - strand, within Pf6N2E2_2086 at 2482.947 kb on - strand, within Pf6N2E2_2086 at 2483.074 kb on + strand at 2483.075 kb on - strand at 2483.145 kb on + strand at 2483.145 kb on + strand at 2483.146 kb on - strand at 2483.837 kb on - strand at 2484.065 kb on + strand, within Pf6N2E2_2088 at 2484.065 kb on + strand, within Pf6N2E2_2088 at 2484.998 kb on - strand, within Pf6N2E2_2089 at 2484.998 kb on - strand, within Pf6N2E2_2089 at 2484.998 kb on - strand, within Pf6N2E2_2089 at 2484.998 kb on - strand, within Pf6N2E2_2089 at 2485.066 kb on + strand, within Pf6N2E2_2089 at 2485.067 kb on - strand, within Pf6N2E2_2089 at 2485.067 kb on - strand, within Pf6N2E2_2089 at 2485.067 kb on - strand, within Pf6N2E2_2089 at 2485.254 kb on + strand, within Pf6N2E2_2089 at 2485.255 kb on - strand, within Pf6N2E2_2089 at 2485.255 kb on - strand, within Pf6N2E2_2089
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 2,482,858 - Pf6N2E2_2086 0.79 -0.3 2,482,858 - Pf6N2E2_2086 0.79 +0.9 2,482,858 - Pf6N2E2_2086 0.79 +0.2 2,482,947 - Pf6N2E2_2086 0.85 -0.9 2,483,074 + -1.5 2,483,075 - -1.6 2,483,145 + -2.4 2,483,145 + -0.3 2,483,146 - -0.9 2,483,837 - -0.5 2,484,065 + Pf6N2E2_2088 0.43 -0.1 2,484,065 + Pf6N2E2_2088 0.43 -2.0 2,484,998 - Pf6N2E2_2089 0.48 +0.1 2,484,998 - Pf6N2E2_2089 0.48 +0.9 2,484,998 - Pf6N2E2_2089 0.48 -0.1 2,484,998 - Pf6N2E2_2089 0.48 -0.7 2,485,066 + Pf6N2E2_2089 0.54 -0.8 2,485,067 - Pf6N2E2_2089 0.55 -0.9 2,485,067 - Pf6N2E2_2089 0.55 +2.4 2,485,067 - Pf6N2E2_2089 0.55 +0.7 2,485,254 + Pf6N2E2_2089 0.72 +1.9 2,485,255 - Pf6N2E2_2089 0.73 +1.3 2,485,255 - Pf6N2E2_2089 0.73 -1.1
Or see this region's nucleotide sequence