Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1996 and Pf6N2E2_1997 are separated by 446 nucleotides Pf6N2E2_1997 and Pf6N2E2_1998 overlap by 4 nucleotides
Pf6N2E2_1996 - DNA repair protein RadC, at 2,362,378 to 2,362,872
_1996
Pf6N2E2_1997 - FIG00956406: hypothetical protein, at 2,363,319 to 2,363,993
_1997
Pf6N2E2_1998 - FIG01212208: hypothetical protein, at 2,363,990 to 2,365,396
_1998
Position (kb)
2363
2364 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2362.432 kb on - strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.482 kb on + strand, within Pf6N2E2_1996 at 2362.483 kb on - strand, within Pf6N2E2_1996 at 2362.483 kb on - strand, within Pf6N2E2_1996 at 2362.483 kb on - strand, within Pf6N2E2_1996 at 2362.501 kb on + strand, within Pf6N2E2_1996 at 2362.535 kb on + strand, within Pf6N2E2_1996 at 2362.536 kb on - strand, within Pf6N2E2_1996 at 2362.612 kb on + strand, within Pf6N2E2_1996 at 2362.689 kb on + strand, within Pf6N2E2_1996 at 2362.717 kb on - strand, within Pf6N2E2_1996 at 2362.945 kb on - strand at 2362.952 kb on - strand at 2362.952 kb on - strand at 2363.046 kb on + strand at 2363.191 kb on - strand at 2363.250 kb on + strand at 2363.251 kb on - strand at 2363.251 kb on - strand at 2363.278 kb on - strand at 2363.414 kb on - strand, within Pf6N2E2_1997 at 2363.466 kb on + strand, within Pf6N2E2_1997 at 2363.466 kb on + strand, within Pf6N2E2_1997 at 2363.539 kb on - strand, within Pf6N2E2_1997 at 2363.539 kb on - strand, within Pf6N2E2_1997 at 2363.865 kb on - strand, within Pf6N2E2_1997 at 2364.150 kb on - strand, within Pf6N2E2_1998 at 2364.348 kb on + strand, within Pf6N2E2_1998 at 2364.348 kb on + strand, within Pf6N2E2_1998 at 2364.402 kb on + strand, within Pf6N2E2_1998 at 2364.402 kb on + strand, within Pf6N2E2_1998 at 2364.403 kb on - strand, within Pf6N2E2_1998 at 2364.487 kb on + strand, within Pf6N2E2_1998 at 2364.762 kb on + strand, within Pf6N2E2_1998 at 2364.763 kb on - strand, within Pf6N2E2_1998 at 2364.909 kb on - strand, within Pf6N2E2_1998 at 2364.909 kb on - strand, within Pf6N2E2_1998
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 2,362,432 - Pf6N2E2_1996 0.11 -1.5 2,362,482 + Pf6N2E2_1996 0.21 -0.3 2,362,482 + Pf6N2E2_1996 0.21 +0.3 2,362,482 + Pf6N2E2_1996 0.21 +0.7 2,362,482 + Pf6N2E2_1996 0.21 -1.1 2,362,482 + Pf6N2E2_1996 0.21 +0.2 2,362,482 + Pf6N2E2_1996 0.21 +0.9 2,362,483 - Pf6N2E2_1996 0.21 -0.1 2,362,483 - Pf6N2E2_1996 0.21 +2.2 2,362,483 - Pf6N2E2_1996 0.21 +0.5 2,362,501 + Pf6N2E2_1996 0.25 +0.1 2,362,535 + Pf6N2E2_1996 0.32 -0.2 2,362,536 - Pf6N2E2_1996 0.32 +0.1 2,362,612 + Pf6N2E2_1996 0.47 +0.0 2,362,689 + Pf6N2E2_1996 0.63 -0.6 2,362,717 - Pf6N2E2_1996 0.68 +1.5 2,362,945 - +0.9 2,362,952 - +0.3 2,362,952 - -0.6 2,363,046 + -0.1 2,363,191 - -1.7 2,363,250 + -0.4 2,363,251 - +0.9 2,363,251 - -1.2 2,363,278 - +0.9 2,363,414 - Pf6N2E2_1997 0.14 +0.9 2,363,466 + Pf6N2E2_1997 0.22 -0.7 2,363,466 + Pf6N2E2_1997 0.22 -0.9 2,363,539 - Pf6N2E2_1997 0.33 -0.1 2,363,539 - Pf6N2E2_1997 0.33 -2.1 2,363,865 - Pf6N2E2_1997 0.81 -1.4 2,364,150 - Pf6N2E2_1998 0.11 +0.4 2,364,348 + Pf6N2E2_1998 0.25 -1.1 2,364,348 + Pf6N2E2_1998 0.25 +0.9 2,364,402 + Pf6N2E2_1998 0.29 -0.6 2,364,402 + Pf6N2E2_1998 0.29 +0.5 2,364,403 - Pf6N2E2_1998 0.29 +0.0 2,364,487 + Pf6N2E2_1998 0.35 +0.9 2,364,762 + Pf6N2E2_1998 0.55 +0.1 2,364,763 - Pf6N2E2_1998 0.55 -1.3 2,364,909 - Pf6N2E2_1998 0.65 +1.5 2,364,909 - Pf6N2E2_1998 0.65 -1.9
Or see this region's nucleotide sequence