Experiment: Cobalt chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1802 and Pf6N2E2_1803 overlap by 8 nucleotides Pf6N2E2_1803 and Pf6N2E2_1804 overlap by 4 nucleotides Pf6N2E2_1804 and Pf6N2E2_1805 are separated by 49 nucleotides
Pf6N2E2_1802 - polysaccharide deacetylase, at 2,131,715 to 2,132,563
_1802
Pf6N2E2_1803 - Polysaccharide deacetylase, at 2,132,556 to 2,133,443
_1803
Pf6N2E2_1804 - Immune-responsive protein 1, at 2,133,440 to 2,134,834
_1804
Pf6N2E2_1805 - Multidrug resistance protein B, at 2,134,884 to 2,136,029
_1805
Position (kb)
2133
2134
2135 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2132.502 kb on + strand at 2133.114 kb on + strand, within Pf6N2E2_1803 at 2133.115 kb on - strand, within Pf6N2E2_1803 at 2133.172 kb on - strand, within Pf6N2E2_1803 at 2133.234 kb on + strand, within Pf6N2E2_1803 at 2133.235 kb on - strand, within Pf6N2E2_1803 at 2133.440 kb on - strand at 2133.541 kb on + strand at 2134.345 kb on - strand, within Pf6N2E2_1804 at 2134.424 kb on + strand, within Pf6N2E2_1804 at 2134.425 kb on - strand, within Pf6N2E2_1804 at 2134.620 kb on + strand, within Pf6N2E2_1804 at 2134.620 kb on + strand, within Pf6N2E2_1804 at 2134.620 kb on + strand, within Pf6N2E2_1804 at 2134.620 kb on + strand, within Pf6N2E2_1804 at 2134.621 kb on - strand, within Pf6N2E2_1804 at 2134.621 kb on - strand, within Pf6N2E2_1804 at 2134.723 kb on - strand at 2134.742 kb on - strand at 2134.742 kb on - strand at 2134.742 kb on - strand at 2134.842 kb on + strand at 2134.842 kb on + strand at 2134.843 kb on - strand at 2134.845 kb on - strand at 2134.956 kb on - strand at 2135.032 kb on - strand, within Pf6N2E2_1805 at 2135.032 kb on - strand, within Pf6N2E2_1805 at 2135.040 kb on + strand, within Pf6N2E2_1805 at 2135.535 kb on + strand, within Pf6N2E2_1805
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.6 mM remove 2,132,502 + -0.9 2,133,114 + Pf6N2E2_1803 0.63 -0.0 2,133,115 - Pf6N2E2_1803 0.63 +0.0 2,133,172 - Pf6N2E2_1803 0.69 +1.3 2,133,234 + Pf6N2E2_1803 0.76 -2.5 2,133,235 - Pf6N2E2_1803 0.76 +1.2 2,133,440 - -0.4 2,133,541 + -0.8 2,134,345 - Pf6N2E2_1804 0.65 -1.5 2,134,424 + Pf6N2E2_1804 0.71 -0.2 2,134,425 - Pf6N2E2_1804 0.71 -0.2 2,134,620 + Pf6N2E2_1804 0.85 -1.4 2,134,620 + Pf6N2E2_1804 0.85 -1.2 2,134,620 + Pf6N2E2_1804 0.85 -3.0 2,134,620 + Pf6N2E2_1804 0.85 -2.6 2,134,621 - Pf6N2E2_1804 0.85 +0.6 2,134,621 - Pf6N2E2_1804 0.85 -0.2 2,134,723 - -0.9 2,134,742 - +0.1 2,134,742 - -1.4 2,134,742 - +0.8 2,134,842 + +0.8 2,134,842 + -0.4 2,134,843 - -0.2 2,134,845 - +0.2 2,134,956 - +0.1 2,135,032 - Pf6N2E2_1805 0.13 -0.0 2,135,032 - Pf6N2E2_1805 0.13 -0.2 2,135,040 + Pf6N2E2_1805 0.14 -0.5 2,135,535 + Pf6N2E2_1805 0.57 -0.6
Or see this region's nucleotide sequence