Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24845 and BWI76_RS24850 are separated by 10 nucleotides BWI76_RS24850 and BWI76_RS24855 are separated by 316 nucleotides
BWI76_RS24845: BWI76_RS24845 - PfkB domain-containing protein, at 5,177,701 to 5,178,648
_RS24845
BWI76_RS24850: BWI76_RS24850 - DeoR family transcriptional regulator, at 5,178,659 to 5,179,489
_RS24850
BWI76_RS24855: BWI76_RS24855 - tagatose-bisphosphate aldolase, at 5,179,806 to 5,180,660
_RS24855
Position (kb) 5178
5179
5180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5177.831 kb on + strand, within BWI76_RS24845 at 5177.859 kb on - strand, within BWI76_RS24845 at 5177.935 kb on + strand, within BWI76_RS24845 at 5178.036 kb on + strand, within BWI76_RS24845 at 5178.221 kb on + strand, within BWI76_RS24845 at 5178.264 kb on + strand, within BWI76_RS24845 at 5178.264 kb on + strand, within BWI76_RS24845 at 5178.272 kb on - strand, within BWI76_RS24845 at 5178.288 kb on + strand, within BWI76_RS24845 at 5178.316 kb on + strand at 5178.345 kb on + strand, within BWI76_RS24845 at 5178.409 kb on - strand, within BWI76_RS24845 at 5178.656 kb on + strand at 5178.656 kb on + strand at 5178.775 kb on + strand, within BWI76_RS24850 at 5178.932 kb on + strand, within BWI76_RS24850 at 5178.972 kb on - strand, within BWI76_RS24850 at 5179.031 kb on + strand, within BWI76_RS24850 at 5179.073 kb on + strand, within BWI76_RS24850 at 5179.298 kb on + strand, within BWI76_RS24850 at 5179.299 kb on + strand, within BWI76_RS24850 at 5179.329 kb on + strand, within BWI76_RS24850 at 5179.352 kb on + strand, within BWI76_RS24850 at 5179.352 kb on + strand, within BWI76_RS24850 at 5179.493 kb on + strand at 5179.708 kb on + strand at 5180.045 kb on + strand, within BWI76_RS24855 at 5180.085 kb on + strand, within BWI76_RS24855 at 5180.328 kb on + strand, within BWI76_RS24855 at 5180.434 kb on + strand, within BWI76_RS24855 at 5180.434 kb on + strand, within BWI76_RS24855 at 5180.442 kb on - strand, within BWI76_RS24855
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 5,177,831 + BWI76_RS24845 0.14 +0.1 5,177,859 - BWI76_RS24845 0.17 -1.0 5,177,935 + BWI76_RS24845 0.25 -0.5 5,178,036 + BWI76_RS24845 0.35 -0.5 5,178,221 + BWI76_RS24845 0.55 +2.4 5,178,264 + BWI76_RS24845 0.59 +0.2 5,178,264 + BWI76_RS24845 0.59 -3.0 5,178,272 - BWI76_RS24845 0.60 -0.4 5,178,288 + BWI76_RS24845 0.62 -0.4 5,178,316 + +0.6 5,178,345 + BWI76_RS24845 0.68 +1.0 5,178,409 - BWI76_RS24845 0.75 +0.2 5,178,656 + +2.0 5,178,656 + -0.0 5,178,775 + BWI76_RS24850 0.14 +1.0 5,178,932 + BWI76_RS24850 0.33 -1.0 5,178,972 - BWI76_RS24850 0.38 -0.1 5,179,031 + BWI76_RS24850 0.45 -0.7 5,179,073 + BWI76_RS24850 0.50 -1.8 5,179,298 + BWI76_RS24850 0.77 -1.5 5,179,299 + BWI76_RS24850 0.77 -1.9 5,179,329 + BWI76_RS24850 0.81 -1.4 5,179,352 + BWI76_RS24850 0.83 -1.9 5,179,352 + BWI76_RS24850 0.83 -2.2 5,179,493 + -1.9 5,179,708 + +0.4 5,180,045 + BWI76_RS24855 0.28 +0.8 5,180,085 + BWI76_RS24855 0.33 +0.2 5,180,328 + BWI76_RS24855 0.61 +0.4 5,180,434 + BWI76_RS24855 0.73 +1.5 5,180,434 + BWI76_RS24855 0.73 -0.2 5,180,442 - BWI76_RS24855 0.74 +0.4
Or see this region's nucleotide sequence