Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16500

Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16495 and BWI76_RS16500 are separated by 121 nucleotidesBWI76_RS16500 and BWI76_RS16505 are separated by 56 nucleotides BWI76_RS16495: BWI76_RS16495 - endopeptidase, at 3,419,170 to 3,420,024 _RS16495 BWI76_RS16500: BWI76_RS16500 - superoxide dismutase [Fe], at 3,420,146 to 3,420,727 _RS16500 BWI76_RS16505: BWI76_RS16505 - MFS transporter, at 3,420,784 to 3,421,950 _RS16505 Position (kb) 3420 3421Strain fitness (log2 ratio) -1 0 1 2at 3419.306 kb on - strand, within BWI76_RS16495at 3419.538 kb on + strand, within BWI76_RS16495at 3419.748 kb on + strand, within BWI76_RS16495at 3420.343 kb on - strand, within BWI76_RS16500at 3420.666 kb on + strand, within BWI76_RS16500at 3421.197 kb on + strand, within BWI76_RS16505at 3421.322 kb on + strand, within BWI76_RS16505at 3421.330 kb on - strand, within BWI76_RS16505at 3421.330 kb on - strand, within BWI76_RS16505at 3421.570 kb on - strand, within BWI76_RS16505at 3421.632 kb on + strand, within BWI76_RS16505at 3421.640 kb on - strand, within BWI76_RS16505

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
remove
3,419,306 - BWI76_RS16495 0.16 +0.9
3,419,538 + BWI76_RS16495 0.43 -0.4
3,419,748 + BWI76_RS16495 0.68 +0.7
3,420,343 - BWI76_RS16500 0.34 -0.9
3,420,666 + BWI76_RS16500 0.89 -1.4
3,421,197 + BWI76_RS16505 0.35 -1.5
3,421,322 + BWI76_RS16505 0.46 +0.8
3,421,330 - BWI76_RS16505 0.47 -0.9
3,421,330 - BWI76_RS16505 0.47 +0.5
3,421,570 - BWI76_RS16505 0.67 +0.7
3,421,632 + BWI76_RS16505 0.73 +2.5
3,421,640 - BWI76_RS16505 0.73 +0.7

Or see this region's nucleotide sequence