Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14635 and BWI76_RS14640 are separated by 159 nucleotides BWI76_RS14640 and BWI76_RS14645 overlap by 26 nucleotides
BWI76_RS14635: BWI76_RS14635 - receptor, at 3,072,082 to 3,073,140
_RS14635
BWI76_RS14640: BWI76_RS14640 - DNA-binding response regulator, at 3,073,300 to 3,073,887
_RS14640
BWI76_RS14645: BWI76_RS14645 - sensor histidine kinase, at 3,073,862 to 3,075,619
_RS14645
Position (kb)
3073
3074
3075
3076 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3073.115 kb on + strand at 3073.296 kb on - strand at 3074.168 kb on + strand, within BWI76_RS14645 at 3074.449 kb on - strand, within BWI76_RS14645 at 3074.506 kb on - strand, within BWI76_RS14645 at 3074.506 kb on - strand, within BWI76_RS14645 at 3074.506 kb on - strand, within BWI76_RS14645 at 3074.533 kb on + strand, within BWI76_RS14645 at 3074.541 kb on - strand, within BWI76_RS14645 at 3075.053 kb on + strand, within BWI76_RS14645 at 3075.150 kb on + strand, within BWI76_RS14645 at 3075.167 kb on + strand, within BWI76_RS14645 at 3075.571 kb on - strand at 3075.594 kb on + strand at 3075.594 kb on - strand at 3075.602 kb on - strand at 3075.833 kb on + strand at 3075.843 kb on + strand at 3075.909 kb on + strand at 3075.943 kb on + strand at 3076.097 kb on - strand at 3076.161 kb on + strand at 3076.185 kb on + strand at 3076.193 kb on - strand at 3076.217 kb on + strand at 3076.374 kb on - strand at 3076.390 kb on + strand at 3076.391 kb on + strand at 3076.408 kb on - strand at 3076.418 kb on - strand at 3076.458 kb on - strand at 3076.458 kb on - strand at 3076.458 kb on - strand at 3076.458 kb on - strand at 3076.463 kb on - strand at 3076.479 kb on - strand at 3076.498 kb on + strand at 3076.501 kb on + strand at 3076.506 kb on - strand at 3076.506 kb on - strand at 3076.506 kb on - strand at 3076.506 kb on - strand at 3076.506 kb on - strand at 3076.507 kb on - strand at 3076.509 kb on - strand at 3076.509 kb on - strand at 3076.514 kb on - strand at 3076.591 kb on - strand at 3076.609 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 3,073,115 + -1.0 3,073,296 - +0.2 3,074,168 + BWI76_RS14645 0.17 -0.8 3,074,449 - BWI76_RS14645 0.33 -0.8 3,074,506 - BWI76_RS14645 0.37 +0.6 3,074,506 - BWI76_RS14645 0.37 +0.8 3,074,506 - BWI76_RS14645 0.37 +2.1 3,074,533 + BWI76_RS14645 0.38 -0.1 3,074,541 - BWI76_RS14645 0.39 -0.8 3,075,053 + BWI76_RS14645 0.68 -0.3 3,075,150 + BWI76_RS14645 0.73 -1.3 3,075,167 + BWI76_RS14645 0.74 +0.8 3,075,571 - -0.5 3,075,594 + -0.1 3,075,594 - +0.2 3,075,602 - +0.8 3,075,833 + -1.2 3,075,843 + +0.9 3,075,909 + +0.5 3,075,943 + -0.9 3,076,097 - +0.2 3,076,161 + +0.3 3,076,185 + +0.3 3,076,193 - +0.3 3,076,217 + -0.6 3,076,374 - +0.3 3,076,390 + +0.4 3,076,391 + -1.6 3,076,408 - -0.1 3,076,418 - +0.6 3,076,458 - +0.7 3,076,458 - +0.1 3,076,458 - -0.5 3,076,458 - -2.2 3,076,463 - -0.3 3,076,479 - -0.5 3,076,498 + -0.6 3,076,501 + +1.0 3,076,506 - -1.5 3,076,506 - -1.0 3,076,506 - -1.2 3,076,506 - -0.0 3,076,506 - -0.2 3,076,507 - -0.2 3,076,509 - -0.7 3,076,509 - -2.3 3,076,514 - -0.5 3,076,591 - -1.3 3,076,609 + -0.6
Or see this region's nucleotide sequence