Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13945

Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13935 and BWI76_RS13940 are separated by 9 nucleotidesBWI76_RS13940 and BWI76_RS13945 are separated by 153 nucleotidesBWI76_RS13945 and BWI76_RS13950 are separated by 46 nucleotidesBWI76_RS13950 and BWI76_RS13955 are separated by 43 nucleotides BWI76_RS13935: BWI76_RS13935 - hypothetical protein, at 2,910,646 to 2,911,080 _RS13935 BWI76_RS13940: BWI76_RS13940 - membrane protein, at 2,911,090 to 2,911,554 _RS13940 BWI76_RS13945: BWI76_RS13945 - lysine exporter protein LysE/YggA, at 2,911,708 to 2,912,340 _RS13945 BWI76_RS13950: BWI76_RS13950 - hypothetical protein, at 2,912,387 to 2,913,079 _RS13950 BWI76_RS13955: BWI76_RS13955 - hypothetical protein, at 2,913,123 to 2,913,725 _RS13955 Position (kb) 2911 2912 2913Strain fitness (log2 ratio) -2 -1 0 1 2at 2910.840 kb on + strand, within BWI76_RS13935at 2911.090 kb on - strandat 2911.132 kb on - strandat 2911.865 kb on + strand, within BWI76_RS13945at 2912.087 kb on - strand, within BWI76_RS13945at 2912.092 kb on + strand, within BWI76_RS13945at 2912.356 kb on + strandat 2912.671 kb on + strand, within BWI76_RS13950at 2912.740 kb on + strand, within BWI76_RS13950at 2912.823 kb on - strand, within BWI76_RS13950at 2912.962 kb on + strand, within BWI76_RS13950at 2912.980 kb on - strand, within BWI76_RS13950at 2913.054 kb on - strandat 2913.300 kb on + strand, within BWI76_RS13955

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
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2,910,840 + BWI76_RS13935 0.45 +1.3
2,911,090 - +2.0
2,911,132 - -0.1
2,911,865 + BWI76_RS13945 0.25 -0.8
2,912,087 - BWI76_RS13945 0.60 -2.0
2,912,092 + BWI76_RS13945 0.61 -0.2
2,912,356 + +0.3
2,912,671 + BWI76_RS13950 0.41 +0.4
2,912,740 + BWI76_RS13950 0.51 -1.3
2,912,823 - BWI76_RS13950 0.63 +0.9
2,912,962 + BWI76_RS13950 0.83 +1.1
2,912,980 - BWI76_RS13950 0.86 +0.4
2,913,054 - +0.5
2,913,300 + BWI76_RS13955 0.29 +1.3

Or see this region's nucleotide sequence