Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13900 and BWI76_RS13905 are separated by 17 nucleotides BWI76_RS13905 and BWI76_RS13910 are separated by 288 nucleotides
BWI76_RS13900: BWI76_RS13900 - MFS transporter, at 2,899,531 to 2,900,694
_RS13900
BWI76_RS13905: BWI76_RS13905 - MFS transporter, at 2,900,712 to 2,902,121
_RS13905
BWI76_RS13910: BWI76_RS13910 - hypothetical protein, at 2,902,410 to 2,902,919
_RS13910
Position (kb)
2900
2901
2902
2903 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2899.742 kb on - strand at 2899.789 kb on - strand, within BWI76_RS13900 at 2900.337 kb on + strand, within BWI76_RS13900 at 2900.752 kb on + strand at 2900.881 kb on - strand, within BWI76_RS13905 at 2900.925 kb on + strand, within BWI76_RS13905 at 2901.307 kb on - strand, within BWI76_RS13905 at 2901.466 kb on + strand, within BWI76_RS13905 at 2901.556 kb on - strand, within BWI76_RS13905 at 2901.669 kb on - strand, within BWI76_RS13905 at 2901.703 kb on - strand, within BWI76_RS13905 at 2901.945 kb on + strand at 2902.093 kb on + strand at 2902.285 kb on + strand at 2902.594 kb on + strand, within BWI76_RS13910 at 2902.685 kb on + strand, within BWI76_RS13910 at 2902.757 kb on + strand, within BWI76_RS13910 at 2902.765 kb on - strand, within BWI76_RS13910 at 2902.810 kb on - strand, within BWI76_RS13910 at 2902.822 kb on + strand, within BWI76_RS13910 at 2902.822 kb on - strand, within BWI76_RS13910 at 2902.830 kb on - strand, within BWI76_RS13910 at 2902.848 kb on + strand, within BWI76_RS13910 at 2902.856 kb on - strand, within BWI76_RS13910 at 2902.874 kb on + strand at 2902.884 kb on - strand at 2902.935 kb on - strand at 2902.937 kb on + strand at 2902.945 kb on - strand at 2902.951 kb on - strand at 2902.956 kb on - strand at 2902.972 kb on + strand at 2902.972 kb on + strand at 2902.972 kb on + strand at 2902.972 kb on + strand at 2902.980 kb on - strand at 2902.980 kb on - strand at 2902.980 kb on - strand at 2902.982 kb on + strand at 2903.038 kb on + strand at 2903.038 kb on + strand at 2903.046 kb on - strand at 2903.063 kb on + strand at 2903.079 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 2,899,742 - +2.0 2,899,789 - BWI76_RS13900 0.22 -0.7 2,900,337 + BWI76_RS13900 0.69 -0.8 2,900,752 + -0.2 2,900,881 - BWI76_RS13905 0.12 +0.5 2,900,925 + BWI76_RS13905 0.15 -0.1 2,901,307 - BWI76_RS13905 0.42 -1.0 2,901,466 + BWI76_RS13905 0.53 -0.4 2,901,556 - BWI76_RS13905 0.60 +1.3 2,901,669 - BWI76_RS13905 0.68 +0.9 2,901,703 - BWI76_RS13905 0.70 +0.2 2,901,945 + -4.2 2,902,093 + -0.6 2,902,285 + -0.2 2,902,594 + BWI76_RS13910 0.36 -0.0 2,902,685 + BWI76_RS13910 0.54 +0.7 2,902,757 + BWI76_RS13910 0.68 +1.1 2,902,765 - BWI76_RS13910 0.70 -0.5 2,902,810 - BWI76_RS13910 0.78 -2.5 2,902,822 + BWI76_RS13910 0.81 +0.6 2,902,822 - BWI76_RS13910 0.81 +0.7 2,902,830 - BWI76_RS13910 0.82 -0.3 2,902,848 + BWI76_RS13910 0.86 -0.1 2,902,856 - BWI76_RS13910 0.87 +0.5 2,902,874 + -0.4 2,902,884 - +0.6 2,902,935 - +0.0 2,902,937 + +2.8 2,902,945 - +0.5 2,902,951 - +0.9 2,902,956 - +0.1 2,902,972 + -0.9 2,902,972 + +0.4 2,902,972 + -1.5 2,902,972 + -0.1 2,902,980 - +0.6 2,902,980 - +0.3 2,902,980 - +0.6 2,902,982 + -1.0 2,903,038 + -1.3 2,903,038 + -1.0 2,903,046 - -0.2 2,903,063 + -1.4 2,903,079 + -3.5
Or see this region's nucleotide sequence