Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06505 and BWI76_RS06510 are separated by 303 nucleotides BWI76_RS06510 and BWI76_RS06515 overlap by 41 nucleotides BWI76_RS06515 and BWI76_RS06520 are separated by 207 nucleotides BWI76_RS06520 and BWI76_RS06525 are separated by 316 nucleotides
BWI76_RS06505: BWI76_RS06505 - hypothetical protein, at 1,367,325 to 1,367,903
_RS06505
BWI76_RS06510: BWI76_RS06510 - BolA family transcriptional regulator, at 1,368,207 to 1,368,524
_RS06510
BWI76_RS06515: BWI76_RS06515 - hypothetical protein, at 1,368,484 to 1,368,664
_RS06515
BWI76_RS06520: BWI76_RS06520 - trigger factor, at 1,368,872 to 1,370,170
_RS06520
BWI76_RS06525: BWI76_RS06525 - ATP-dependent Clp protease proteolytic subunit, at 1,370,487 to 1,371,110
_RS06525
Position (kb) 1368
1369
1370
1371 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1368.159 kb on + strand at 1368.214 kb on + strand at 1368.244 kb on - strand, within BWI76_RS06510 at 1368.276 kb on + strand, within BWI76_RS06510 at 1368.416 kb on - strand at 1368.456 kb on - strand, within BWI76_RS06510 at 1368.458 kb on - strand, within BWI76_RS06510 at 1368.458 kb on - strand, within BWI76_RS06510 at 1368.507 kb on + strand at 1368.515 kb on - strand at 1368.807 kb on - strand at 1368.967 kb on + strand at 1369.034 kb on + strand, within BWI76_RS06520 at 1369.227 kb on + strand, within BWI76_RS06520 at 1369.227 kb on + strand, within BWI76_RS06520 at 1369.280 kb on + strand, within BWI76_RS06520 at 1369.328 kb on + strand, within BWI76_RS06520 at 1369.782 kb on - strand, within BWI76_RS06520 at 1369.865 kb on - strand, within BWI76_RS06520 at 1369.900 kb on - strand, within BWI76_RS06520 at 1370.142 kb on + strand at 1370.182 kb on + strand at 1370.182 kb on + strand at 1370.369 kb on + strand at 1370.379 kb on - strand at 1370.397 kb on - strand at 1370.402 kb on - strand at 1370.523 kb on + strand at 1370.651 kb on + strand, within BWI76_RS06525 at 1370.854 kb on - strand, within BWI76_RS06525 at 1370.987 kb on - strand, within BWI76_RS06525 at 1371.000 kb on + strand, within BWI76_RS06525 at 1371.007 kb on + strand, within BWI76_RS06525
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 1,368,159 + +0.4 1,368,214 + +0.1 1,368,244 - BWI76_RS06510 0.12 +0.1 1,368,276 + BWI76_RS06510 0.22 -0.6 1,368,416 - +1.2 1,368,456 - BWI76_RS06510 0.78 -2.0 1,368,458 - BWI76_RS06510 0.79 +0.0 1,368,458 - BWI76_RS06510 0.79 +0.1 1,368,507 + +0.5 1,368,515 - +0.6 1,368,807 - -2.8 1,368,967 + -1.7 1,369,034 + BWI76_RS06520 0.12 -0.7 1,369,227 + BWI76_RS06520 0.27 -1.6 1,369,227 + BWI76_RS06520 0.27 +0.6 1,369,280 + BWI76_RS06520 0.31 -1.8 1,369,328 + BWI76_RS06520 0.35 +0.9 1,369,782 - BWI76_RS06520 0.70 -1.1 1,369,865 - BWI76_RS06520 0.76 -1.0 1,369,900 - BWI76_RS06520 0.79 -0.1 1,370,142 + -1.1 1,370,182 + -0.5 1,370,182 + -0.5 1,370,369 + +0.4 1,370,379 - +1.3 1,370,397 - +0.8 1,370,402 - -0.0 1,370,523 + -0.3 1,370,651 + BWI76_RS06525 0.26 +1.0 1,370,854 - BWI76_RS06525 0.59 -0.1 1,370,987 - BWI76_RS06525 0.80 -0.1 1,371,000 + BWI76_RS06525 0.82 -1.4 1,371,007 + BWI76_RS06525 0.83 -1.8
Or see this region's nucleotide sequence