Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06195 and BWI76_RS06200 are separated by 87 nucleotides BWI76_RS06200 and BWI76_RS06205 are separated by 45 nucleotides BWI76_RS06205 and BWI76_RS06210 are separated by 37 nucleotides
BWI76_RS06195: BWI76_RS06195 - hypothetical protein, at 1,299,436 to 1,300,101
_RS06195
BWI76_RS06200: BWI76_RS06200 - hypothetical protein, at 1,300,189 to 1,300,473
_RS06200
BWI76_RS06205: BWI76_RS06205 - recombination-associated protein RdgC, at 1,300,519 to 1,301,430
_RS06205
BWI76_RS06210: BWI76_RS06210 - fructokinase, at 1,301,468 to 1,302,426
_RS06210
Position (kb) 1300
1301
1302 Strain fitness (log2 ratio) -1
0
1 at 1299.630 kb on + strand, within BWI76_RS06195 at 1299.663 kb on - strand, within BWI76_RS06195 at 1299.665 kb on + strand, within BWI76_RS06195 at 1299.717 kb on + strand, within BWI76_RS06195 at 1299.773 kb on + strand, within BWI76_RS06195 at 1299.809 kb on + strand, within BWI76_RS06195 at 1299.809 kb on + strand, within BWI76_RS06195 at 1299.817 kb on - strand, within BWI76_RS06195 at 1299.891 kb on + strand, within BWI76_RS06195 at 1299.902 kb on + strand, within BWI76_RS06195 at 1300.156 kb on - strand at 1300.179 kb on - strand at 1300.250 kb on + strand, within BWI76_RS06200 at 1300.448 kb on + strand at 1300.664 kb on - strand, within BWI76_RS06205 at 1300.989 kb on - strand, within BWI76_RS06205 at 1301.100 kb on - strand, within BWI76_RS06205 at 1301.333 kb on + strand, within BWI76_RS06205 at 1301.688 kb on + strand, within BWI76_RS06210 at 1301.740 kb on - strand, within BWI76_RS06210 at 1302.125 kb on + strand, within BWI76_RS06210 at 1302.146 kb on + strand, within BWI76_RS06210 at 1302.154 kb on - strand, within BWI76_RS06210 at 1302.308 kb on - strand, within BWI76_RS06210 at 1302.308 kb on - strand, within BWI76_RS06210
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 1,299,630 + BWI76_RS06195 0.29 +0.0 1,299,663 - BWI76_RS06195 0.34 +0.8 1,299,665 + BWI76_RS06195 0.34 -0.3 1,299,717 + BWI76_RS06195 0.42 +0.3 1,299,773 + BWI76_RS06195 0.51 +0.9 1,299,809 + BWI76_RS06195 0.56 +0.8 1,299,809 + BWI76_RS06195 0.56 -1.7 1,299,817 - BWI76_RS06195 0.57 +0.4 1,299,891 + BWI76_RS06195 0.68 -0.3 1,299,902 + BWI76_RS06195 0.70 +0.9 1,300,156 - +0.1 1,300,179 - -0.0 1,300,250 + BWI76_RS06200 0.21 +0.3 1,300,448 + +1.1 1,300,664 - BWI76_RS06205 0.16 +0.5 1,300,989 - BWI76_RS06205 0.52 +0.1 1,301,100 - BWI76_RS06205 0.64 +0.2 1,301,333 + BWI76_RS06205 0.89 +0.4 1,301,688 + BWI76_RS06210 0.23 +0.8 1,301,740 - BWI76_RS06210 0.28 +1.3 1,302,125 + BWI76_RS06210 0.69 -0.6 1,302,146 + BWI76_RS06210 0.71 +0.6 1,302,154 - BWI76_RS06210 0.72 -0.1 1,302,308 - BWI76_RS06210 0.88 -0.3 1,302,308 - BWI76_RS06210 0.88 +0.7
Or see this region's nucleotide sequence