Experiment: LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00660 and BWI76_RS00665 are separated by 96 nucleotides BWI76_RS00665 and BWI76_RS00670 are separated by 82 nucleotides
BWI76_RS00660: BWI76_RS00660 - ABC transporter, at 134,301 to 135,812
_RS00660
BWI76_RS00665: BWI76_RS00665 - rhamnose ABC transporter substrate-binding protein, at 135,909 to 136,895
_RS00665
BWI76_RS00670: BWI76_RS00670 - Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) <small>(from data)</small>, at 136,978 to 137,808
_RS00670
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 134.975 kb on + strand, within BWI76_RS00660 at 135.066 kb on + strand, within BWI76_RS00660 at 135.149 kb on - strand, within BWI76_RS00660 at 135.151 kb on - strand at 135.207 kb on - strand, within BWI76_RS00660 at 135.360 kb on + strand, within BWI76_RS00660 at 135.436 kb on + strand, within BWI76_RS00660 at 135.563 kb on + strand, within BWI76_RS00660 at 135.596 kb on + strand, within BWI76_RS00660 at 135.641 kb on + strand, within BWI76_RS00660 at 135.649 kb on - strand, within BWI76_RS00660 at 135.766 kb on + strand at 135.834 kb on + strand at 135.844 kb on + strand at 135.878 kb on + strand at 135.878 kb on + strand at 135.878 kb on + strand at 135.880 kb on + strand at 135.886 kb on - strand at 135.905 kb on - strand at 136.080 kb on + strand, within BWI76_RS00665 at 136.270 kb on + strand, within BWI76_RS00665 at 136.272 kb on - strand, within BWI76_RS00665 at 136.348 kb on + strand, within BWI76_RS00665 at 136.387 kb on - strand, within BWI76_RS00665 at 136.409 kb on - strand, within BWI76_RS00665 at 136.525 kb on - strand, within BWI76_RS00665 at 136.525 kb on - strand, within BWI76_RS00665 at 136.571 kb on + strand, within BWI76_RS00665 at 136.579 kb on - strand, within BWI76_RS00665 at 136.696 kb on + strand, within BWI76_RS00665 at 136.715 kb on - strand, within BWI76_RS00665 at 136.997 kb on - strand at 136.997 kb on - strand at 137.015 kb on - strand at 137.016 kb on + strand at 137.072 kb on - strand, within BWI76_RS00670 at 137.148 kb on + strand, within BWI76_RS00670 at 137.324 kb on - strand, within BWI76_RS00670 at 137.356 kb on + strand, within BWI76_RS00670 at 137.356 kb on + strand, within BWI76_RS00670 at 137.364 kb on - strand, within BWI76_RS00670 at 137.378 kb on - strand, within BWI76_RS00670 at 137.457 kb on + strand, within BWI76_RS00670 at 137.457 kb on + strand, within BWI76_RS00670 at 137.535 kb on + strand, within BWI76_RS00670 at 137.640 kb on - strand, within BWI76_RS00670 at 137.770 kb on - strand at 137.778 kb on + strand at 137.808 kb on - strand at 137.846 kb on - strand at 137.846 kb on - strand at 137.846 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL remove 134,975 + BWI76_RS00660 0.45 +0.2 135,066 + BWI76_RS00660 0.51 +1.0 135,149 - BWI76_RS00660 0.56 +0.2 135,151 - +3.8 135,207 - BWI76_RS00660 0.60 -1.3 135,360 + BWI76_RS00660 0.70 +0.2 135,436 + BWI76_RS00660 0.75 +1.0 135,563 + BWI76_RS00660 0.83 +2.0 135,596 + BWI76_RS00660 0.86 +1.0 135,641 + BWI76_RS00660 0.89 -1.8 135,649 - BWI76_RS00660 0.89 -0.1 135,766 + +0.3 135,834 + -0.0 135,844 + +0.4 135,878 + +0.2 135,878 + -0.3 135,878 + -0.8 135,880 + +1.3 135,886 - +0.9 135,905 - +0.3 136,080 + BWI76_RS00665 0.17 +0.1 136,270 + BWI76_RS00665 0.37 +0.5 136,272 - BWI76_RS00665 0.37 +0.4 136,348 + BWI76_RS00665 0.44 -0.2 136,387 - BWI76_RS00665 0.48 -0.2 136,409 - BWI76_RS00665 0.51 -2.1 136,525 - BWI76_RS00665 0.62 +0.7 136,525 - BWI76_RS00665 0.62 +1.9 136,571 + BWI76_RS00665 0.67 +0.5 136,579 - BWI76_RS00665 0.68 +0.2 136,696 + BWI76_RS00665 0.80 +1.2 136,715 - BWI76_RS00665 0.82 +0.7 136,997 - +0.8 136,997 - +1.0 137,015 - +1.0 137,016 + -0.2 137,072 - BWI76_RS00670 0.11 +0.3 137,148 + BWI76_RS00670 0.20 -1.3 137,324 - BWI76_RS00670 0.42 +0.4 137,356 + BWI76_RS00670 0.45 -2.1 137,356 + BWI76_RS00670 0.45 +0.7 137,364 - BWI76_RS00670 0.46 -1.2 137,378 - BWI76_RS00670 0.48 -0.5 137,457 + BWI76_RS00670 0.58 +0.3 137,457 + BWI76_RS00670 0.58 -1.6 137,535 + BWI76_RS00670 0.67 -0.3 137,640 - BWI76_RS00670 0.80 -0.4 137,770 - -0.8 137,778 + +0.8 137,808 - +0.6 137,846 - +1.0 137,846 - -0.6 137,846 - -1.3
Or see this region's nucleotide sequence